Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0978 ATGGATACGCTGTTTAGGCTAGATCCACCGTCCCTAAACTCCACAACAACATCATCAACCAACTCTCATCAAAATTATTATTATTATTATGACCAACACCAACTAGAGGAAGAAGCTGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCTTCTTCTTCAAAGCAACCAGAACAATATTACCCTTATTATAACCAATTACAACCCCACTACCATTTATTATCATCCACTACCACTACTCATCATGATTTATCGTCAACATCATTCTTACCACCCACTCCACCACCATCAGATTTCAACTTTGAATTCTCATCAGGCSCGTGGGCACCCAACATCCTCCTCGACACCGCACGTGCCATCGCTGACAACAACACCACGCGACTGCATCAACTCCTATGGATGCTCAACGAGCTAAGCTCTCCATACGGCGACACAAACCAAAAACTCGCCGCGTATTTTCTTCAAGCCTTGTTCAGCCGCATAACCACCGTCGGCGAACGAACCTACCGAACCTTAACGTTAGCTTCGGACAAGACTTGCTGTTTCGAGTCCACCAGGAAGACGGTTCTCAAGTTCCAGGAGGTTAGTCCCTGGACCACGTTTGGACACGTGGCGTCCAATGGCGCCATCTTAGAGGCTCTCGATGGGGAGCTCAACTTGCACATTGTGGATTTCAGCAACACGTACTGCACACAGTGGCCAACGCTTCTTGAAGCCTTGGCCACTCGTAGCGACGACACCCCGAACCTCCGWTTAACCACCGTCGTCACCACCAGACCTGGTGACTCTGGCGACGCTGTTCAGAGGGTCATGAAGGAAATAGGTACAAGGATGGAGAAATTTGCGAGGCTAATGGGAGTTCCGTTCAAATTCAACGTCGTTTGCCACGTCGGCGATCTCTCCAATCTCAACTTCGGCGATTTGGACATCAAGAACGAGGAGGCCTTAGCCATCAACTGCGTGAACACGCTGCACGCGATCACACCCGTCGGGAACCACCGTGACACGTTGATATCCTCGCTGGCGAGGCTAAACCCTCGGATCGTGACGGTGGTGGAAGAAGAAGCGGATCTGGACGTTGGCGCCGAAGGCCAGGAGTTCCTTACAGGGTTCGAGGAATGCGTGAAGTGGTTTAGGGTTTACATGGAGGCGCTGGATGAGAGCTTTACGAGGACGAGTGGGGAGAGGCTGATGCTGGAGAGGGCGGCGGGGAGGGCGATTGTGGACCTGGTGGCGTGTACGGCGGAGGAGTCGGTGGAGCGGAGGGAGACGGCGGTGAAATGGTCACAGAAAATGAGGGAAGGTGGGGGGTTGAATAGGATGCCGTTTAGCGAGGAGGTGTGTGATGACGTCAGAGCATTGTTGAGAAGGTATAGGGAAGGGTGGTCGATGGCACAGTGTTCCGATAACGGAGTATTTCTTTGTTGGAAGGACCAGCCGGTGGTGTGGGCCAGTGCATGGAAGCCGTAG 1482 0.5175 MDTLFRLDPPSLNSTTTSSTNSHQNYYYYYDQHQLEEEAEEECFNFFMDEEDLSSSSSKQPEQYYPYYNQLQPHYHLLSSTTTTHHDLSSTSFLPPTPPPSDFNFEFSSGXWAPNILLDTARAIADNNTTRLHQLLWMLNELSSPYGDTNQKLAAYFLQALFSRITTVGERTYRTLTLASDKTCCFESTRKTVLKFQEVSPWTTFGHVASNGAILEALDGELNLHIVDFSNTYCTQWPTLLEALATRSDDTPNLRLTTVVTTRPGDSGDAVQRVMKEIGTRMEKFARLMGVPFKFNVVCHVGDLSNLNFGDLDIKNEEALAINCVNTLHAITPVGNHRDTLISSLARLNPRIVTVVEEEADLDVGAEGQEFLTGFEECVKWFRVYMEALDESFTRTSGERLMLERAAGRAIVDLVACTAEESVERRETAVKWSQKMREGGGLNRMPFSEEVCDDVRALLRRYREGWSMAQCSDNGVFLCWKDQPVVWASAWKP* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0978 493 ProSiteProfiles GRAS family profile. 104 492 IPR005202 -
Amo11g0978 493 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 492 IPR005202 -
Amo11g0978 493 PANTHER PROTEIN SHORT-ROOT 1 492 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Amo11g0978 493 Pfam GRAS domain family 116 492 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0978 Amo-Chr11 28254565 28256602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0978 26 493 GRAS Transcription Factor Family AT4G37650 60.040 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo11g0978 GRAS 4e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0978 - - gmx:100778524 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0978 11 28254565 28256602 Amo11g0978 11 28254565 28256602 ECH
Amo01g1323 01 22001887 22003924 Amo11g0978 11 28254565 28256602 hybridization
Amo05g0578 05 6691327 6694131 Amo11g0978 11 28254565 28256602 PCT
Amo11g0978 11 28254565 28256602 Amo05g0578 05 6691327 6694131 PCT