Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0969 ATGGGTGCTCCTAAACAGAAATGGACTGCAGAAGAAGAAGCAGCACTTAAAGCTGGAGTAGTCAAACATGGAGCAGGAAAATGGCGCACTATACTTACAGATCCAGAGTTTAGTTCCATCTTGCGCATGCGCTCCAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCCAAGCTAGCCCTTAAAAAGAACRTACTACTACCAGCCCCTAAAATCGACAACYATCATATGGCCTTGAGTACAGCAGTTCGACATGATGAAAATGTTCTCGAAACTAAGCCCCTAGCAATATGTGGTCTGTCATTGCCATCTCATAATTCAAAACAACAATTATCAAGGTTGGATGATCATATATTAGAGGCTATTATAAGTTTGAAGGAGCCAAGGGGTTCTGACAGGAATGCCATTGCTTCATACATAGAGGAAAATTATCAATCTCCTACAAACCTTGWAAAGTTACTGCGAACAAGACTGAAGCATATGGTGGATATTGGCAAAATAATCAAGGTACAACAGAGGTACAAGATTAGTCCAAGTTCGACAGGCTCTGAGAAAAGAAGATACTCTTCTTCCACTTTACCGCTGGAAGGGAGGCCCAGAGATTCTCCAGAAGCAGAGAAGAGTCATGATGTCAACATCCTTTCAAAATCCCAAGTTGATGCGGATATATCGAAAGCAAAGAGCATGACAGCTCAAGAGGCAGCTGTGGCAGCTGCAAAGGCAGTTGCAGAGGCAGAAGCCGCCATTGCTGAAGCAGAGTTAGCAGCGAGGGAGGCAGAGGCTGCAGAAGCTGAGGCAGAGGCTGCTCATGTGTTTGCAAAAGCAGCAATGAAGGCACTAAAATGCAAAACATCTCTTATCTGGTAG 900 0.44 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNXLLPAPKIDNXHMALSTAVRHDENVLETKPLAICGLSLPSHNSKQQLSRLDDHILEAIISLKEPRGSDRNAIASYIEENYQSPTNLXKLLRTRLKHMVDIGKIIKVQQRYKISPSSTGSEKRRYSSSTLPLEGRPRDSPEAEKSHDVNILSKSQVDADISKAKSMTAQEAAVAAAKAVAEAEAAIAEAELAAREAEAAEAEAEAAHVFAKAAMKALKCKTSLIW* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0969 299 PANTHER SINGLE MYB HISTONE 4 1 295 IPR044597 GO:0003691
Amo11g0969 299 PANTHER MYB TRANSCRIPTION FACTOR 1 295 - -
Amo11g0969 299 SUPERFAMILY "Winged helix" DNA-binding domain 120 198 IPR036390 -
Amo11g0969 299 CDD SANT_TRF 6 57 - -
Amo11g0969 299 Gene3D - 2 59 - -
Amo11g0969 299 MobiDBLite consensus disorder prediction 189 219 - -
Amo11g0969 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Amo11g0969 299 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo11g0969 299 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Amo11g0969 299 Coils Coil 246 280 - -
Amo11g0969 299 Gene3D - 118 201 IPR036388 -
Amo11g0969 299 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo11g0969 299 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Amo11g0969 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo11g0969 299 SMART sant 4 59 IPR001005 -
Amo11g0969 299 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0969 Amo-Chr11 28013070 28017270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0969 1 294 Single Myb Histone (SMH) Gene Family AT5G67580 54.054 2.32e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo11g0969 Linker_histone 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0969 K09422 - gmx:100779583 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1329 01 22145198 22148980 Amo11g0969 11 28013070 28017270 hybridization
Amo05g0573 05 6648963 6653708 Amo11g0969 11 28013070 28017270 PCT
Amo11g0969 11 28013070 28017270 Amo05g0573 05 6648963 6653708 PCT