Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0960 ATGATTTTCAGAGCACCCTCAGACTCTGTTGATGTTTGCATGTGTTGTGCCACCACTGGCTCTCCATTCATATCCACACTGGAGCTTAGGCCCTTGAATGTGTCAATGTATGCCATGGATTTCGAGGATGATTTCTTCTTGAAAGTGGCTGCAAGGATCAACTTTGGTGCTACTAGCAAGGATGCTGTCAGGTATCCAGATGATCCATATGATAGAATTTGGGATTCGGATATCATTAAAAGACAAAACTTTCTTGTTGGGGTGGCCCCAGGCACAATTAGAATTAACACAATAAAGAACATAGATATACAGACAAGGGAATACCCTCCTGTTAAAGTGATGCAAACCGCGGTTGTAGGCACAAAACAGGTACTCAGCTACAGACTGAACCTTGAAGACTTTCCTGCCAACGCTAGAACTTACGCATATTTTGCAGAGATCCAAGATCTCGGTAAGAACGAGACTCGAAAATTCAAATTGGAGCAACCTTATATACCTGACTATAGCAATGCAGTAGTTAACATAGCTGAGAATGCAAATGGTAGCTACACTCTATATGAACCAAGTTATATGAATGTGAGTATGGATTTTGTTCTTTCCTTCTCCTTTGCTAAGACCAGGGATTCTACTCAAGGACCTCTTCTAAATGCAATGAAAATAAGAAAATATGTTGAAATCGCTTCCAAAACTGACAAAGAAGATGTAAATGTAATAAATGTGTTTCGCTACTTGTCTTCCGATACTGACCCAAATAACAGGGATCCCTGTGTTCTAACACCCTGGGAGTCGGTTAATTGTAGTGAAACTACCCCTCCAAGAATCATAAAGATAAACCTGTCAAGAAGGAATGTGAAAGATGAAATTCCACAAGAGCTCAACAACATGGAAGCATTGACAGAGTTGTGGTTAGATGGTAACTTGCTTATAGGAACACTACCTGACATGAGCAATCTTATCAATCTAAACCTTGTGCATTTAGAGATCAACAAATTGACTGGTCCATTACCATCTTACTTGGGTAGTTTGCCAAATTTGCAAGCACTGTTCATACAAAAGAACTCATTTAGCGGAAAAATACCAACAGGACTATTATCTGGAAAAATTATTTTCAACTATGATAATAATCCTGAACTACATAGAGGGAACAAGAAGCATTTTCAGTTGATACTAGGAGCTTCAATTGGAATACTAGTAATATTATTACTATTATTCTTAACAAGTCTTCTGCTAATGCATAATGCACGGAGAAAGGCATCTAAACAGAAATGTGACGAAAAAGAGTTGAAAAAAGCTACTAATAATTTTTCAAGAAAAATCGGGAAAGGGAGCTTTGGATCTGTCTACTATGGGAGAATGAAAGATGGAAAGGAGATTGCGGTTAAGACTATGACAGATCCATCCAGCCATGGGAACCAACAATTTGTGACTGAGGTAGCTCTCCTCTTAAGAATTCATCACAGAAACTTGGTTCCTTTGATTGGATATTGTGAAGAAGAATATCAGAATATTCTTGTTTACGAGTACATGCACAATGGCACATTAAGGGATCACCTTCATGGTCTAATTCCACTCCCTCATATTCATTTATTTTTATTTAGTCGAAGTTGTAGTCAGAAACAATTAGACTGGTTAGCACGGCTTCGGATTGCAGAAGATGCAGCGAAAGGCCTTGAATACTTGCACACAGGATGCAATCCTAGTATTATTCACCGAGATGTAAAGACGAGCAATATTCTCCTCGACATCAATATGAGAGCAAAAGTGTCAAATTTTGGACTATCAAGGTTAGCTGAAGAAGATTTGACTCATATATCAAGTGTTGYAAGAGGAACTGTAGGCTACCTGGATCCTGAGTACTATGCAAGTCAACAAATATTCAAAAAGAGTGACGTATATAGTTTTAGAGTTGTTGTGCTGGAATTGATATCTGGAAGAAAGCCGGTATCACTAGAAGATTATGGTCCTGAAATGAATATAGTTCATTGGAAAATATACAGAAGACAAAGTAGTCCAAGATTTGAAGGTGACGACTTCGTCCTTCACTATTACCTTCTTGGACAAGTTCATCACTTACATGCAAGATCCTTAATCCAAAAAGGTGACGTAGTAAGCATCATGGATCCATCCCTGGTTGGGAATGTCAAAACTGAGTCGGTTTGA 2160 0.3852 MIFRAPSDSVDVCMCCATTGSPFISTLELRPLNVSMYAMDFEDDFFLKVAARINFGATSKDAVRYPDDPYDRIWDSDIIKRQNFLVGVAPGTIRINTIKNIDIQTREYPPVKVMQTAVVGTKQVLSYRLNLEDFPANARTYAYFAEIQDLGKNETRKFKLEQPYIPDYSNAVVNIAENANGSYTLYEPSYMNVSMDFVLSFSFAKTRDSTQGPLLNAMKIRKYVEIASKTDKEDVNVINVFRYLSSDTDPNNRDPCVLTPWESVNCSETTPPRIIKINLSRRNVKDEIPQELNNMEALTELWLDGNLLIGTLPDMSNLINLNLVHLEINKLTGPLPSYLGSLPNLQALFIQKNSFSGKIPTGLLSGKIIFNYDNNPELHRGNKKHFQLILGASIGILVILLLLFLTSLLLMHNARRKASKQKCDEKELKKATNNFSRKIGKGSFGSVYYGRMKDGKEIAVKTMTDPSSHGNQQFVTEVALLLRIHHRNLVPLIGYCEEEYQNILVYEYMHNGTLRDHLHGLIPLPHIHLFLFSRSCSQKQLDWLARLRIAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSNFGLSRLAEEDLTHISSVXRGTVGYLDPEYYASQQIFKKSDVYSFRVVVLELISGRKPVSLEDYGPEMNIVHWKIYRRQSSPRFEGDDFVLHYYLLGQVHHLHARSLIQKGDVVSIMDPSLVGNVKTESV* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0960 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672|GO:0006468
Amo11g0960 719 ProSiteProfiles Protein kinase domain profile. 433 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0960 719 PANTHER TYROSINE KINASE DOMAIN PROTEIN 1 663 - -
Amo11g0960 719 PANTHER OS07G0107800 PROTEIN-RELATED 1 663 - -
Amo11g0960 719 SMART serkin_6 433 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0960 719 SUPERFAMILY Protein kinase-like (PK-like) 424 663 IPR011009 -
Amo11g0960 719 Gene3D Phosphorylase Kinase; domain 1 411 508 - -
Amo11g0960 719 SUPERFAMILY L domain-like 257 379 - -
Amo11g0960 719 Gene3D Transferase(Phosphotransferase) domain 1 509 719 - -
Amo11g0960 719 Pfam Protein tyrosine and serine/threonine kinase 435 648 IPR001245 GO:0004672|GO:0006468
Amo11g0960 719 ProSitePatterns Protein kinases ATP-binding region signature. 439 461 IPR017441 GO:0005524
Amo11g0960 719 Pfam Malectin-like domain 3 220 IPR024788 -
Amo11g0960 719 Gene3D Ribonuclease Inhibitor 232 384 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0960 Amo-Chr11 27830827 27835611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0960 1 719 Receptor kinase-like Gene Family AT1G67720 64.229 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Amo11g0960 PK_Tyr_Ser-Thr 3.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0960 - - gmx:100807148 1090.87