Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0958 ATGGTCCCAATTGGCCTCATACACTACCGTACCACTGATATGGAGCTTAAGCACCAACTTGGTCTTCTTTGCGTTATATTGCTTTTACCAGCACTAAGCATCGCCACTAATAATGACTATTGCCCTTGGAATTCTTATAAGAACTCTAGGGCATCCTATTATGGTACCCGTGATGGTTATGGGACTCCAAGTGGAGCATGTGGATTTGGCGAATATGGAAGGATGGACAATGATGGCAAGGTTGCAGCGGTATCTGGGCTATGGAAAGGTGGAAGTGGCTGCGGTGCATGCTATCAGGTTAAATGTAAAGTACCAACATTGTGCAATGTCAACGGGGTAACCGTGGTGGCAACAGATTATGGTGAGGGAGACAGAACAGATTTCATACTGAGCCCACGCGCTTTTGAGAGTTTGGGTGTGAGTCTTAATGCATCTGAAGAGCTCAAAAAGTACGGTACTCTTGATATTGCATACAAGAGAGTTCCTTGCAATGGCAAGATTGTTATTAAGATCCACGAAAGTAGCAGCAACCCTGGATACTTTGCTATGGTGCTTCTCAGCCATGGTGGATTATACGATGTCACTAGTGTTGAATTCTGGGAGGATTCACGCAAACAATGGACTCCATTGCGGAGAGCTTATGGGGCAGTGTTTGACTATGCTAACCCACCAAGGGGTCCACTCTTCTTGAGGTTCCAAGATACCGGTTGTCATGGAGCTTATTCGCAAGAACTAAATAAACCTATCCCTGCTAATTGGCAGCCGAAAATGATTTTTACTTTTGACAATGGACTTCAGCTTTAA 804 0.4465 MVPIGLIHYRTTDMELKHQLGLLCVILLLPALSIATNNDYCPWNSYKNSRASYYGTRDGYGTPSGACGFGEYGRMDNDGKVAAVSGLWKGGSGCGACYQVKCKVPTLCNVNGVTVVATDYGEGDRTDFILSPRAFESLGVSLNASEELKKYGTLDIAYKRVPCNGKIVIKIHESSSNPGYFAMVLLSHGGLYDVTSVEFWEDSRKQWTPLRRAYGAVFDYANPPRGPLFLRFQDTGCHGAYSQELNKPIPANWQPKMIFTFDNGLQL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0958 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 164 IPR007112 -
Amo11g0958 267 Pfam Lytic transglycolase 85 150 IPR009009 -
Amo11g0958 267 SUPERFAMILY Barwin-like endoglucanases 38 164 IPR036908 -
Amo11g0958 267 Pfam Expansin C-terminal domain 168 234 IPR007117 -
Amo11g0958 267 Gene3D - 165 262 IPR036749 -
Amo11g0958 267 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Amo11g0958 267 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Amo11g0958 267 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Amo11g0958 267 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Amo11g0958 267 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Amo11g0958 267 SUPERFAMILY PHL pollen allergen 165 260 IPR036749 -
Amo11g0958 267 Gene3D - 30 164 IPR036908 -
Amo11g0958 267 PANTHER EXPANSIN-B3 15 259 - -
Amo11g0958 267 PANTHER EXPANSIN-B1-LIKE PROTEIN 15 259 - -
Amo11g0958 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 261 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0958 Amo-Chr11 27721837 27723889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0958 14 267 Expansin Gene Family AT4G17030 44.615 2.53e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0958 - - adu:107485050 403.29