Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0911 ATGGAAGAAAAAGCTGCGAGAGCTTATGATATGGCGGCACTCAAGTACTGGGGACCCTCCACGCACATTAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGGGGAGCTTCAATGTACAGAGGAGTAACTAGGCATCACCAACATGGAAGGTGGCAAGCTCGAATTGGAAGGGTAGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACACAAGAGGAAGCAGCAGAAGCTTATGACATTGCAGCCATAAAATTCAGAGGGGTTAATGCCGTAACAAACTTTGACATAACAAGATATGATGTCGAAAAAATCATGGCAAGCAACAACCTTCTAAGCAGTGAGCTAGCACGGCGGAACAAAGAGGTTCTCGTTGGCAGAGCCGGCGAGTTTAGTAACAACCTTGATAACCAAAGCCAAGAATCGATTCTAATGCAAATCAGCCAGAGCCAGCCAAGACTGGAGGCAATAGACAATGTGTTTTTTCAAGAAGTGGAGGATCCGAGCAAGATTTATGCGCATTTGCATAATGCGCATGCATCGGATCCTTCTTCGCTGGCAACGAGCTTGAACAGCTCAAGAGAAGGTAGCCCTGAAAACAGGACAAGCTTGCCAATGCTCTCTGCCGGAGGAGTAGCTTCTACCAAGCTATTGGCAGCCGCGGCAACTATTCCGGTGCTTTCTTTGCCTCAGATGCCCGTTTTTGCCGCTTGGACAGATGCTTAG 798 0.4586 MEEKAARAYDMAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKEVLVGRAGEFSNNLDNQSQESILMQISQSQPRLEAIDNVFFQEVEDPSKIYAHLHNAHASDPSSLATSLNSSREGSPENRTSLPMLSAGGVASTKLLAAAATIPVLSLPQMPVFAAWTDA* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0911 265 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Amo11g0911 265 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Amo11g0911 265 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Amo11g0911 265 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 1 263 - -
Amo11g0911 265 SUPERFAMILY DNA-binding domain 61 121 IPR016177 GO:0003677
Amo11g0911 265 CDD AP2 61 122 IPR001471 GO:0003700|GO:0006355
Amo11g0911 265 SUPERFAMILY DNA-binding domain 2 28 IPR016177 GO:0003677
Amo11g0911 265 Gene3D AP2/ERF domain 62 122 IPR036955 GO:0003700|GO:0006355
Amo11g0911 265 Gene3D AP2/ERF domain 1 28 IPR036955 GO:0003700|GO:0006355
Amo11g0911 265 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 263 - -
Amo11g0911 265 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Amo11g0911 265 ProSiteProfiles AP2/ERF domain profile. 1 26 IPR001471 GO:0003700|GO:0006355
Amo11g0911 265 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Amo11g0911 265 MobiDBLite consensus disorder prediction 205 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0911 Amo-Chr11 26060457 26063927 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0911 1 265 AP2-EREBP Transcription Factor Family AT4G37750 59.398 6.29e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo11g0911 AP2 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0911 K09285 - gmx:100787611 348.206