Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0904 ATGGGTCTTCATCATGATTCTACTCATAATAATAACAACATAGGCCTTCATCTTGTTCTAGGGTTGGCTCTGAGTTCCTCCTCTGATTCACCAACACAAGAAACCATAACTACCTCTACTAAGATCCCGCCGTACTCCTCTTCCTCCACCGTAACAACCGATGATGCTGAATTACTATTACCATCTCTTACTTTAGCTCTCTCCGGTCACGATGTGAACAAAAACAAAAACGATGATACGCAAGAGCACCATAGGGTCCAGGTAGTCCCTACCAAGGCTAACAACAATAAGGTCTACAGTAGTGAAGACTACCCTTCTACTGGTGACGTGTCGGCACAGAATTCGCCTCACCACAGCGCCGTTTCGTCTTTCTCCAGCGGCTGCAGAAGAGGAGTCAAGAGGGAGAGGGATGTTAGCGCTAGCGACGAAGCCGAGGCGGAGGCCACGGAGATTGAGAGGCTTTCGTCGCGAATCAGCGACGAAGAGGAAGACGGTGGCACCACCGCCTCCGCCGCTGCCAGGAAGAAGCTTAGGCTCACCAAAGAACAATCTGCTCTGTTGGAAGACAGCTTCAAACAACATAGCACTCTCAATCCTAAGCAGAAGCAAGCTTTAGCGAAGCAATTGAATCTACGGCCTCGACAAGTTGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTAGATTGCGAGTTCCTAAAGAAGTGTTGTGAGACACTAACAGATGAGAACAGAAGGCTACAGAAAGAGCTTCAAGAGCTTAAGGCACTCAAACTGTCTCAGCCTTTGTACATGCCTCCCATGCCCGCCGCGACACTCACCATCTGCCCTTCTTGCGACCGGGCCGTTGCCATTGGCAGCGGTGGCAGCGCTTCCAATAACATCAAGAATACTCCTTTGATCTCCTTGGCCCCCAAGCCTCACCACTTCTTTAGTCCCTTCACCAATCCTTCCGCAGCATGTTGA 984 0.503 MGLHHDSTHNNNNIGLHLVLGLALSSSSDSPTQETITTSTKIPPYSSSSTVTTDDAELLLPSLTLALSGHDVNKNKNDDTQEHHRVQVVPTKANNNKVYSSEDYPSTGDVSAQNSPHHSAVSSFSSGCRRGVKRERDVSASDEAEAEATEIERLSSRISDEEEDGGTTASAAARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYMPPMPAATLTICPSCDRAVAIGSGGSASNNIKNTPLISLAPKPHHFFSPFTNPSAAC* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0904 327 Pfam Homeobox associated leucine zipper 230 264 IPR003106 GO:0006355|GO:0043565
Amo11g0904 327 CDD homeodomain 174 231 IPR001356 GO:0003677
Amo11g0904 327 ProSiteProfiles 'Homeobox' domain profile. 170 230 IPR001356 GO:0003677
Amo11g0904 327 MobiDBLite consensus disorder prediction 129 170 - -
Amo11g0904 327 ProSitePatterns 'Homeobox' domain signature. 205 228 IPR017970 GO:0000981|GO:0006355
Amo11g0904 327 MobiDBLite consensus disorder prediction 26 48 - -
Amo11g0904 327 MobiDBLite consensus disorder prediction 92 170 - -
Amo11g0904 327 MobiDBLite consensus disorder prediction 92 126 - -
Amo11g0904 327 SUPERFAMILY Homeodomain-like 164 231 IPR009057 -
Amo11g0904 327 Pfam Homeodomain 174 228 IPR001356 GO:0003677
Amo11g0904 327 SMART halz 230 273 IPR003106 GO:0006355|GO:0043565
Amo11g0904 327 Coils Coil 236 266 - -
Amo11g0904 327 Coils Coil 144 164 - -
Amo11g0904 327 Gene3D - 165 235 - -
Amo11g0904 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 16 327 - -
Amo11g0904 327 PANTHER - 16 327 - -
Amo11g0904 327 SMART HOX_1 172 234 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0904 Amo-Chr11 25261491 25264783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0904 18 327 Homeobox Transcription Factor Family AT4G37790 55.096 9.41e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo11g0904 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0904 K09338 - gmx:100795135 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1360 01 23825985 23829098 Amo11g0904 11 25261491 25264783 hybridization
Amo05g0517 05 5972380 5974365 Amo11g0904 11 25261491 25264783 PCT
Amo11g0904 11 25261491 25264783 Amo05g0517 05 5972380 5974365 PCT