Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0899 ATGAGACAGAATGCAATTTCAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGCTGCGAACATTCCTTTCCTTGTTGCACATCTGCACAGGATGCATATTCAACCACCGCTATGTAAAATCAAATCCCCGTGAAGTTGAGAATGCAACATGGATGCTCATGCCACGCACAACACTAGTTATGGACACGCCGGAGAGGAACCAGATCAACCCTCCCTTCTCTCGTGTCGAGGATTCCCCTGTATTCAGTTTTATCAACAGTTTGTCGCCTATAAAGCCCGTGAAGTCTGCCCAGATTGGTCAAACATTTAGCTCGCTTAGCTTTCCTTCCCCTCCGCGTGCTTTTACTTCATCCAATCTCACCTGTTTCAAGGAATCAAAAGTTCTCAGGAGGCATAACCCTTTTGGGGCATCAAGGCCTGGGTTGTCATCTGAAGATGGTAATAAATTTCAGACAAGTGAAGAGGCTATTGCAGATTCATTTCATCCATATCATAACTCGAGGGAATCTCAGGGAAATTTTCATGATGGAATATCTGTAGTTGATGATTCGATTGCTCTACCTGGTGAGCACACAGACTTCTCAGCTGAGATACTGCAGGCCTTAAATTATAATAATTGTGGTAACCCTGGCTCTGATCCTGGTCATGAGGCTAACTCTCTTGAAGTGTTTAATCAGGGGTTGTGTCAATTTGATCCGAAGGGCCAAGAATCAGAGTGTAATTGGGATAATTTAATCTCTGGAGATACTGATTTCTTCGTTTTCAATTCCCCAAATGACGCAGCTTTTAAGGGTATAATGCAGAAACCAGATTCTCATTTTATGTCTCTGGTACTGGAATCTTCCATATATAATGGTCTGAGAGATAGCAAACTTAAAATAGAAGATTATCGTCCTGAGCCCTTAGCAATCATAGACCAAATGCAGGACAAACATTGCCTTGCCATGACTAGCAAAACAAAAGAAAAACCAAATGTTGAGCTTGTTTCTGTGATGAACTGTGGTACACGGAGGCGATGTCTAGACTTTGAGACTGACAGTGTGCAAAGGAAGAACTCAGATGATAATTTAAAATCCGGTTCTCTTGGATATGAAAAACAACTGGTTTCTGCAAAACGCAAAAGCAGTTCACAGCAATGCATTATGCCTGCAGTTGGCTTACATTTGAATGCACCCGACAAAGAAGTCATAAGTAATGATGAGTCGTCTTGCGGAATTCATCTTAATCTTCCCAGTTGCACTTCCGTGCAAATCTATACCAGCTATGAACATCAGGAACCACTAGCAATAGAAGTGGATTCATCAAACATTGGGCCTCAGCCAGCTAAGGATAATTCTCATGCATTAGATTCCACTGTTAATGATGTCAGTCAGAATAGTCCCAAAAAGAAAAGACATGGAGACTGCAAGCGTTGCAAGTGCAAGAAATCAAAGTGTTTGAAGTTATATTGTGAGTGCTTTGCTGCTCGTGACTACTGCACAGGCAACTGCTCATGTAAGGATTGCTGCAACAAACTTGTTCATAAAGACAAAGTCATTCAAGCTCACAAGCAGATCGAGTCTCGCAATCCTCTGGCTTTTGCTCCTAAAGTCATTCCTGAACCTGAAATTGGGAATGATCCAAATAAAACTCCAGCACCAGCACGACACAAGAGGGGATGCAACTGCAAACAATCAGTCTGCATAAAGAAATACTGTGAATGCTTTCAGGCTGGTGTTGGATGCTCTTTAAGCTGTAGATGTGAAGGGTGTAAGAACACATTTGGTAGAAAGGAGGGCGCTAATTCTATGGGAGTAGAAGCCCAGCTAGAAGTAGAAACAGAGGCCTGTGGAAAAGTTGTTGAAAAAGCATCACAGATAATTGAAGTTCAGAACTCCGATAATCATCCAGATTTTATTCCAATCTCTACGCCATTCCCTCTGTTTAGTTCATTGTCAGAGGTGAAACCAAACACTCGTTGGTCTCAGCCACCTAAGCATTCTCAAGCTGTTTCGGACCAGGAAATGACAGATGTTCTTGGAGGCCGAGGCAGAAGTGATAGGTCTCCCATGACCATCAAAACTTCTTCTCCAAGTGGGAAGAGGATTTCCACTTCTAAGGGTGAATTGACAATTTCTTTTCCTTCTCCTAATCATCATCGTTAG 2154 0.4239 MRQNAISDHTIVLMLDQSALLLRTFLSLLHICTGCIFNHRYVKSNPREVENATWMLMPRTTLVMDTPERNQINPPFSRVEDSPVFSFINSLSPIKPVKSAQIGQTFSSLSFPSPPRAFTSSNLTCFKESKVLRRHNPFGASRPGLSSEDGNKFQTSEEAIADSFHPYHNSRESQGNFHDGISVVDDSIALPGEHTDFSAEILQALNYNNCGNPGSDPGHEANSLEVFNQGLCQFDPKGQESECNWDNLISGDTDFFVFNSPNDAAFKGIMQKPDSHFMSLVLESSIYNGLRDSKLKIEDYRPEPLAIIDQMQDKHCLAMTSKTKEKPNVELVSVMNCGTRRRCLDFETDSVQRKNSDDNLKSGSLGYEKQLVSAKRKSSSQQCIMPAVGLHLNAPDKEVISNDESSCGIHLNLPSCTSVQIYTSYEHQEPLAIEVDSSNIGPQPAKDNSHALDSTVNDVSQNSPKKKRHGDCKRCKCKKSKCLKLYCECFAARDYCTGNCSCKDCCNKLVHKDKVIQAHKQIESRNPLAFAPKVIPEPEIGNDPNKTPAPARHKRGCNCKQSVCIKKYCECFQAGVGCSLSCRCEGCKNTFGRKEGANSMGVEAQLEVETEACGKVVEKASQIIEVQNSDNHPDFIPISTPFPLFSSLSEVKPNTRWSQPPKHSQAVSDQEMTDVLGGRGRSDRSPMTIKTSSPSGKRISTSKGELTISFPSPNHHR* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0899 717 MobiDBLite consensus disorder prediction 441 461 - -
Amo11g0899 717 SMART CXC_2 552 593 IPR033467 -
Amo11g0899 717 SMART CXC_2 470 511 IPR033467 -
Amo11g0899 717 MobiDBLite consensus disorder prediction 685 717 - -
Amo11g0899 717 MobiDBLite consensus disorder prediction 653 717 - -
Amo11g0899 717 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 473 508 IPR005172 -
Amo11g0899 717 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 555 590 IPR005172 -
Amo11g0899 717 MobiDBLite consensus disorder prediction 439 467 - -
Amo11g0899 717 ProSiteProfiles CRC domain profile. 471 592 IPR005172 -
Amo11g0899 717 MobiDBLite consensus disorder prediction 653 671 - -
Amo11g0899 717 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 64 703 IPR044522 GO:0003700
Amo11g0899 717 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 64 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0899 Amo-Chr11 24748033 24752860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0899 79 645 CPP Transcription Factor Family AT4G14770 36.271 3.39e-91 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Amo11g0899 TCR 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0899 - - aip:107628213 1439.86