Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0887 ATGGCTGTGAATGAATTAGACACGGAACAAGACCTTGCACCATCAAAGAAGAAGCCACTTTCTGAGGATGAGAAGAGGAAGAAGAAAATTGTGCCTGGGAGTTTGATGAAAGCGGTTGTGAGGCCTGGTGGTGGTGATTCTGGACCTTCAGATGGTGATCAGGTTATTTATCATTCCACAGTTCGAACATTAGACGGAGTGCTTGTGGAATCTACTAGGTCTGATTATGGAGGCAAGGGCACACCAATAAGACATGTTTTAGGCAAAAGCAAGATATTATTGGGCTTGCTGGAAGGAATCCCAACAATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGATGCACTATGGTGAGGATGATTGTCCTATTTCTGCTCCTGATAGTTTTCCAAAGGAGGATGAACTTCACTTTGAAATTGAGCTGATAGAATTTTTCAAAGCCAAGGCAAGGATGTATGCTTTTGACTTCTTTTCACTTTCGTTCTCCATCTGTCATATCCTAGTGAATTTTGTAGTGCAGAACTGGTTTTCTGGTGTTTATGTGGTTGTTACTGATGATTTGGGAGTTGTGAAAAAGGTTATTAATGAAGGTCAGGGTTGGGAATCTCCAAGAGAACCTTACGAAGTGAAGGCTTGGATTTCAGCAAAGACAGCTACAGGGAAATTGATTATGTCACATACAAAAGGAGAACCATACTTCTTTACATTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGGAATAGGAACAATGACTCGGGAAGAGAAGGCTGTTATATATGTTACAAGTCAGTATTTAACTCAGTCTCCACTGATGCCTGTAATAGAAGATTACGATGAAGTGCAGTTTGAGGTGGAGCTCGTCCACTTTATTCAAGATGCACGAAATGGGTTTGTAACCTGTAATGTTATTGGTATGACCATGGGTGTGGTGAGGGACATGCTTGGAGATGGGCGCCTAATAAAGCGCCGCATTCGTGATGGCAAAGGTGACTTCCCAATGGATTGCCCTCTTCATGACAGCCTACTTCGTGTACATTACAAGGGCACGATTGTCAATGAAGAAAATAGAGTATTCTACGATACAAGAGTTGATAATGATGGTGAGCCTTTGGAGTTCTGCTCTGGAGAAGGTCTGGTGCCAGAAGGATTTGAAATGAGTGTTCGCTTGATGCTTCCTGGAGAGATAGCTCTTGTCTCATGCCCCCCTGACTATGCATATGATAAGTTTCCAAGGCCAGCAAATGTCCCTGATGGCGCTCATATTCAATGGGAGATTGAACTTCTTGGTTTTGAAATGCCAAAGGACTGGACTGGATTGGACTTTAATAGTATAATGAATGAGGCTGAGAAGATCAGAAACACGGGTAACAGGCTATTCAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTACGAGAGTTTAATCATGTTAATCCACAAGATGATGAAGAAGGAAAAATATTTGCAGATACACGGAATTTGTTACACCTTAATGTTGCTGCGTGCTATCTGAAAGTAGGAGAATGCAGAAAGTCCATTGAGACTTGCAACAAGGTTTTGGAAGCAAAGCCTGCACATGTCAAGGGTTTATATCGTCGTGGAATGGCCTACATGGCTAATGGAGATTTTGAAGAAGCAAGGAATGATTTCAAAATGATGATGAAAGTTGACAAGTCAGCTGAACCTGATGCAACTGCAGCTCTTTCGAAATTGAAGCAGAAGGAACAGGAAGTTGAGAGGAAAGCTCGGAAACAATTTAAAGGGCTTTTCGACAAGAAGCCTGGAGAGATTTCAGGAGTCAAAGCTGATGAAGATGGAAATCCAAGTACAAGTGAAAACCAGGACAGTGAAGAACACAGTGACGCCGATGGAACAAATTCAGAGGATTCTCATGAAGCTGCACCTGACGCACGTCCAAGGAGTTGGATCTCTCTCTTTTGGCCTACTGGCAAAAGAATTTTTGAGTCTCTTGGTCTGCAAAGATGTACCATACTGTGA 2025 0.4217 MAVNELDTEQDLAPSKKKPLSEDEKRKKKIVPGSLMKAVVRPGGGDSGPSDGDQVIYHSTVRTLDGVLVESTRSDYGGKGTPIRHVLGKSKILLGLLEGIPTMLKGEVAMFKMKPQMHYGEDDCPISAPDSFPKEDELHFEIELIEFFKAKARMYAFDFFSLSFSICHILVNFVVQNWFSGVYVVVTDDLGVVKKVINEGQGWESPREPYEVKAWISAKTATGKLIMSHTKGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTQSPLMPVIEDYDEVQFEVELVHFIQDARNGFVTCNVIGMTMGVVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTIVNEENRVFYDTRVDNDGEPLEFCSGEGLVPEGFEMSVRLMLPGEIALVSCPPDYAYDKFPRPANVPDGAHIQWEIELLGFEMPKDWTGLDFNSIMNEAEKIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKIFADTRNLLHLNVAACYLKVGECRKSIETCNKVLEAKPAHVKGLYRRGMAYMANGDFEEARNDFKMMMKVDKSAEPDATAALSKLKQKEQEVERKARKQFKGLFDKKPGEISGVKADEDGNPSTSENQDSEEHSDADGTNSEDSHEAAPDARPRSWISLFWPTGKRIFESLGLQRCTIL* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0887 674 Pfam Tetratricopeptide repeat 537 560 IPR019734 GO:0005515
Amo11g0887 674 ProSiteProfiles TPR repeat profile. 536 569 IPR019734 GO:0005515
Amo11g0887 674 SMART tpr_5 453 486 IPR019734 GO:0005515
Amo11g0887 674 SMART tpr_5 502 535 IPR019734 GO:0005515
Amo11g0887 674 SMART tpr_5 536 569 IPR019734 GO:0005515
Amo11g0887 674 SUPERFAMILY FKBP-like 317 435 - -
Amo11g0887 674 SUPERFAMILY FKBP-like 25 154 - -
Amo11g0887 674 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 228 295 IPR001179 GO:0003755
Amo11g0887 674 Gene3D Tetratricopeptide repeat domain 447 601 IPR011990 GO:0005515
Amo11g0887 674 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 71 622 - -
Amo11g0887 674 MobiDBLite consensus disorder prediction 621 645 - -
Amo11g0887 674 Coils Coil 573 593 - -
Amo11g0887 674 MobiDBLite consensus disorder prediction 1 33 - -
Amo11g0887 674 Gene3D - 3 155 IPR046357 GO:0003755
Amo11g0887 674 Gene3D - 184 296 IPR046357 GO:0003755
Amo11g0887 674 Gene3D - 310 435 IPR046357 GO:0003755
Amo11g0887 674 SUPERFAMILY TPR-like 451 591 IPR011990 GO:0005515
Amo11g0887 674 MobiDBLite consensus disorder prediction 601 649 - -
Amo11g0887 674 MobiDBLite consensus disorder prediction 10 31 - -
Amo11g0887 674 SUPERFAMILY FKBP-like 185 294 - -
Amo11g0887 674 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 344 436 IPR001179 GO:0003755
Amo11g0887 674 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 345 433 IPR001179 GO:0003755
Amo11g0887 674 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 49 145 IPR001179 GO:0003755
Amo11g0887 674 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 206 292 IPR001179 GO:0003755
Amo11g0887 674 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 148 IPR001179 GO:0003755
Amo11g0887 674 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PASTICCINO1 71 622 IPR031135 GO:0030154|GO:0042761|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0887 Amo-Chr11 24499020 24508884 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0887 35 601 Calmodulin-binding Proteins AT5G48570 27.903 2.36e-54 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0887 - - gmx:100818201 1072