Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0882 ATGCGCCTCTTCCTCTTCCACTTCCTCTTCTTCCTCCTCCGCCTCCATCTCACGGCCCACTCCGCCCACATCTCCGAGCGCCGTGCCTTGCTCTCCTTCAAAGCCGCCTCCATTACCTCCGATCCCACCTCCGCTCTCTCTTCCTGGTCCCCCACCTCTCCCTCCGACCACTGCACATGGCGCGGCGTCTCCTGCGACCACCACCTCCGCCACGTCACCTCCCTCAACCTCTCTTCCCTCTCCCTCTCCGGCACTCTCTCCGGCGACCACCTCTCGCTCCTCCCCTTTCTCACCAACCTCTCCCTCTCCGATAACAAATTCTCCGGCCCTATTCCCAGTTCTCTTTCCTCTCTCACAAACCTCCGCTTCCTCAACCTCTCTAACAACATCTTCAACGGAACCTTCCCTAATGAACTTTCCATTCTCCACAATGTTGAAGTTCTTGACCTTTACAATAACAATATGACCGGTCTTCTTCCCCTCGCCGTCACCGACATGACTGAGCTTCGCCACTTGCACCTCGGCGGAAACTTCTTCTCCGGCGAAATTCCGCGGGAGTACGGCAAATGGCAGAAGCTGGAGTACCTTGCGGTTTCCGGTAACGAGCTTGTCGGGAAAATCCCGCCGGAGATCGGAAACCTTAGCTCCCTCCAGGAGCTTTATGTAGGGTACTACAACACTTACGACGGCGGAATACCGCCGGAGATCGGGAATTTGTCCGAGCTTGTCAGGCTCGACGCCGCGTACTGTGGACTCTCCGGCGAGATTCCTGCGGAGATAGGGAGGCTTCAGAAGCTCGACACCCTCTTCCTCCAGGTGAATGCGCTTTTCGGTTCACTAACTACGGAACTTGGGAGCCTCAAAAGCCTAAAATCAATGGATTTATCGAACAATATGCTCGCCGGTGATATTCCCGCGAGCTTCGCGGCGCTGAAGAACATAACTCTCGTGAACCTCTTCCGCAACAAGCTCCACGGTGAGATACCGGAGTTCATAGGTGAGCTTCCGTCGCTGGAGGTGCTTCAGCTGTGGGACAACAACTTCACCGGAAGCATTCCTCAGAATTTGGGGAAGAACGGCAGGCTCACGATCGTTGACCTCTCGTCGAACAAGCTTACGGGAACTTTGCCACCGTTAATGTGTTCCGGTAACCGTCTTCAGACACTGATAACTCTCGGTAACTTCCTCTTTGGTCCAATTCCTGATTCACTCGGAAAGTGTGAGTCTCTGAGTAGGGTGAGAATGGGTGAAAATTTCTTGAACGGTTCAATCCCTAAGGGTCTGTTTGGGCTTCCGAAACTGACGCAGGTTGAACTTCAGGATAATCTTCTGACCGGAGAGTTTCCTGTTTCTGGTTCCGTTGCACCGAACTTGGGGCAAATTAGTCTTTCCAATAACAAGCTTTCAGGGCCGTTACCTCCGTCCATTGGGAACTTCTCCGGCATGCAGAAGCTTCTACTTGACGGGAACCGGTTCTCGGGCCGGATCCCGCCGGAGATTGGCAGGCTACAGCAGCTCTCCAAGATGGATTTCAGCAATAATAAGTTCTCTGGTCCTGTTGCTCCGGAGATCAGCCAGTGCAAGTTGTTGACATTCGTTGATCTCAGCCGCAACGAACTCTCCGGCGAGGTTCCAAATGAGATCACTGGAATGCGGATACTGAACTATTTGAACCTTTCAAGGAACCACTTGGTTGGTCCAATTCCGGGTTCTATTGCTTCCATGCAGAGTTTAACATCGGTGGATTTTTCTTACAACAATCTCTCTGGTTTGGTTCCTGGCACTGGCCAATTCAGTTACTTCAACTATACCTCTTTCTTGGGGAACCCCGAACTCTGTGGCCCTTATTTAGGTCCTTGCAAAGACGGTGTTGTCAATGGCCCTCGTCAGCCTCATGTTAAGGGTCCACTCTCTTCTTCCTTGAAGCTATTGCTGGTTATTGGGCTTCTTGTTTGCTCTATCTTGTTCGCTGTGGCGGCAATCTTCAAGGCGCGGTCCCTGAAGAAGGCGAGCGAGGCGCGCGCCTGGAAGCTCACGGCGTTCCAGCGATTGGACTTCACTGTGGACGATGTTCTGAATTGCTTGAAGGAGGATAACATCATAGGAAAAGGAGGTGCTGGAATTGTGTACAAAGGGGCCATGGCGAATGGGGATCAAGTTGCTGTAAAGAGGTTACCGGCTATGAGTAGAGGATCATCCCATGATCATGGTTTCAATGCTGAGATTCAAACTTTAGGGAGGATTCGACACAGGCACATTGTTAGGTTGTTGGGGTTCTGTTCGAACCACGAGACGAATCTTCTTGTGTATGAGTACATGCCTAATGGAAGCTTGGGTGAGGTTCTTCATGGGAAGAAAGGGGGTCACTTGCATTGGGACACAAGGTACAAGATTGCTGTGGAGGCTGCAAAGGGGCTTTGTTACTTGCATCATGATTGTTCGCCGCTTATTGTGCACCGCGATGTCAAGTCGAACAATATCCTTCTTGATTCCAGCTTTGAAGCCCATGTTGCTGATTTTGGGCTAGCCAAGTTCCTCCAAGATTCTGGAACATCTGAATGCATGTCGGCTATTGCCGGTTCATATGGATACATAGCTCCAGAGTATGCCTACACTTTGAAAGTCGATGAGAAGAGCGATGTGTACAGCTTTGGCGTTGTTCTTTTGGAGCTTGTAACCGGAAGGAAACCGGTTGGTGAGTTCGGTGACGGCGTGGACATTGTGCAATGGGTGAGGAAAATGACAGACTCAAACAAGGAAGGAGTGCTTAAGGTTCTTGATCCTAGGCTTCCCTCAGTTCCCCTCCATGAGGTGATGCACGTTTTCTATGTCGCCATGCTGTGTGTCGAAGAACAAGCTGTAGAGCGACCAACCATGCGCGAAGTGGTTCAAATTCTCACCGAGCTTCCAAAGCCACCGGGATCTAAGCAGGGAGATTCGACAATCACCGAGTCCTCATCATTGTCATCATCAAACAGCTTAGAGTCTCCAATGGCCACATCATCGAAAGAGCATACTAAAGATAATCAAAACCCTCCGAAGTCACCGCCACCAGATCTTCTTAGCATCTAA 3072 0.5114 MRLFLFHFLFFLLRLHLTAHSAHISERRALLSFKAASITSDPTSALSSWSPTSPSDHCTWRGVSCDHHLRHVTSLNLSSLSLSGTLSGDHLSLLPFLTNLSLSDNKFSGPIPSSLSSLTNLRFLNLSNNIFNGTFPNELSILHNVEVLDLYNNNMTGLLPLAVTDMTELRHLHLGGNFFSGEIPREYGKWQKLEYLAVSGNELVGKIPPEIGNLSSLQELYVGYYNTYDGGIPPEIGNLSELVRLDAAYCGLSGEIPAEIGRLQKLDTLFLQVNALFGSLTTELGSLKSLKSMDLSNNMLAGDIPASFAALKNITLVNLFRNKLHGEIPEFIGELPSLEVLQLWDNNFTGSIPQNLGKNGRLTIVDLSSNKLTGTLPPLMCSGNRLQTLITLGNFLFGPIPDSLGKCESLSRVRMGENFLNGSIPKGLFGLPKLTQVELQDNLLTGEFPVSGSVAPNLGQISLSNNKLSGPLPPSIGNFSGMQKLLLDGNRFSGRIPPEIGRLQQLSKMDFSNNKFSGPVAPEISQCKLLTFVDLSRNELSGEVPNEITGMRILNYLNLSRNHLVGPIPGSIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVVNGPRQPHVKGPLSSSLKLLLVIGLLVCSILFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLNCLKEDNIIGKGGAGIVYKGAMANGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSSFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPGSKQGDSTITESSSLSSSNSLESPMATSSKEHTKDNQNPPKSPPPDLLSI* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0882 1023 Pfam Protein tyrosine and serine/threonine kinase 697 966 IPR001245 GO:0004672|GO:0006468
Amo11g0882 1023 SUPERFAMILY Protein kinase-like (PK-like) 688 966 IPR011009 -
Amo11g0882 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Amo11g0882 1023 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 1007 - -
Amo11g0882 1023 Gene3D Ribonuclease Inhibitor 226 381 IPR032675 -
Amo11g0882 1023 SUPERFAMILY RNI-like 74 397 - -
Amo11g0882 1023 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 1007 - -
Amo11g0882 1023 MobiDBLite consensus disorder prediction 967 1023 - -
Amo11g0882 1023 SUPERFAMILY L domain-like 360 620 - -
Amo11g0882 1023 SMART LRR_typ_2 287 310 IPR003591 -
Amo11g0882 1023 SMART LRR_typ_2 575 598 IPR003591 -
Amo11g0882 1023 SMART LRR_typ_2 166 190 IPR003591 -
Amo11g0882 1023 SMART LRR_typ_2 335 359 IPR003591 -
Amo11g0882 1023 SMART LRR_typ_2 479 503 IPR003591 -
Amo11g0882 1023 SMART LRR_typ_2 142 165 IPR003591 -
Amo11g0882 1023 SMART LRR_typ_2 94 118 IPR003591 -
Amo11g0882 1023 Gene3D Phosphorylase Kinase; domain 1 660 772 - -
Amo11g0882 1023 Gene3D Ribonuclease Inhibitor 530 620 IPR032675 -
Amo11g0882 1023 ProSiteProfiles Protein kinase domain profile. 695 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0882 1023 SMART serkin_6 695 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0882 1023 Gene3D Ribonuclease Inhibitor 455 529 IPR032675 -
Amo11g0882 1023 Gene3D Ribonuclease Inhibitor 382 454 IPR032675 -
Amo11g0882 1023 Gene3D Transferase(Phosphotransferase) domain 1 773 986 - -
Amo11g0882 1023 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Amo11g0882 1023 Gene3D Ribonuclease Inhibitor 23 225 IPR032675 -
Amo11g0882 1023 MobiDBLite consensus disorder prediction 974 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0882 Amo-Chr11 24089879 24094055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0882 16 997 Receptor kinase-like Gene Family AT5G65700 80.061 0.0 1576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo11g0882 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0882 - - gmx:100499646 1686.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1400 01 25678547 25682145 Amo11g0882 11 24089879 24094055 hybridization
Amo05g0498 05 5795040 5799471 Amo11g0882 11 24089879 24094055 PCT
Amo11g0882 11 24089879 24094055 Amo05g0498 05 5795040 5799471 PCT