Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0874 ATGAAATCTCACACTAATCTCACAACATTAAAATCATCATTGATAGAAATTGATGAGGATTACAATTTCTTCCCGGACCTTGATTTTGATCTAGTCGATGAGGAAGATTTTCTTTCACATGAGTTAATAGCAAGTGAGGATCTTCAAGGGAAGTCTGCACTACAGGACCAATCTTTATCTGCAGAGTGCAATTCCAAAGAGCTAAGTAATTGTTGCACCGATGAAATGATGAGTTTTGAAGAGATGCTAAGAAACATCAACGATGAAACCTTTTCACCCAAACTTTCTTCATCATCTTCTCAGATTCTGTCCTTTGATAACTCAGACTCATTATCATCATCTCCACCCAATAATACGACACAGTTTTATGAGTTGAAAAATAGCTTAAACCAAAGGCAAGACTCAGTTGAAACTCCAAATAATAATAATAATAAAAAGAGTGATTCCTTGAATACACAAAATGTGGAAGCAAAGAGTACCTCAACACTTGGTAAGAGGTCACCATCTCATGCTCACGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGTCAGAGTTTCATTGCTCTTGCAGCCCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGGGACTCTATCAGGTATGTGAAAGAGCTGAAAGAGCGTTTGGCAGTGCTCGAAGAAGAATCCAAGAAAACAAAGGCGAAAAAAGCAGAACAACTCCATGGTCATGGTGCTGCTGTGTTCTCCTCGTTATGCGAAGAGACCATTGATGGTAGTCTTCCACAGGTTGAAGCAAGAGAGTGGGGGCAACAAGTGTTGCTTCGAATCCACTGCTGGAAGGAAGAGGGCATTTTGGTCAGAATATTGTCTGAGATTCAAAGCCTTCAATTGATGCTTCTTAATAGCAGTGTCTTATCATTTGGAGATTCCATTCTTGACATAACCATCATTGTTCAGGCGGGCGAAGGTTACAACTTGACCCTTAATGAACTTGTCAAGAACCTACGCACCGCTACTTTGAAACTCATGTCATAG 1035 0.4039 MKSHTNLTTLKSSLIEIDEDYNFFPDLDFDLVDEEDFLSHELIASEDLQGKSALQDQSLSAECNSKELSNCCTDEMMSFEEMLRNINDETFSPKLSSSSSQILSFDNSDSLSSSPPNNTTQFYELKNSLNQRQDSVETPNNNNNKKSDSLNTQNVEAKSTSTLGKRSPSHAHDHIIAERKRREKISQSFIALAALVPGLKKMDKASVLGDSIRYVKELKERLAVLEEESKKTKAKKAEQLHGHGAAVFSSLCEETIDGSLPQVEAREWGQQVLLRIHCWKEEGILVRILSEIQSLQLMLLNSSVLSFGDSILDITIIVQAGEGYNLTLNELVKNLRTATLKLMS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0874 344 Coils Coil 328 344 - -
Amo11g0874 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 235 IPR036638 GO:0046983
Amo11g0874 344 PANTHER BHLH TRANSCRIPTION FACTOR 26 344 - -
Amo11g0874 344 SMART finulus 175 224 IPR011598 GO:0046983
Amo11g0874 344 MobiDBLite consensus disorder prediction 133 173 - -
Amo11g0874 344 Pfam Helix-loop-helix DNA-binding domain 174 218 IPR011598 GO:0046983
Amo11g0874 344 Gene3D - 160 236 IPR036638 GO:0046983
Amo11g0874 344 MobiDBLite consensus disorder prediction 133 166 - -
Amo11g0874 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Amo11g0874 344 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 26 344 - -
Amo11g0874 344 Coils Coil 208 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0874 Amo-Chr11 23394633 23399865 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0874 144 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.050 3.32e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo11g0874 HLH 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0874 - - aip:107617512 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1415 01 26429712 26432655 Amo11g0874 11 23394633 23399865 hybridization
Amo05g0497 05 5775270 5776950 Amo11g0874 11 23394633 23399865 PCT
Amo11g0874 11 23394633 23399865 Amo05g0497 05 5775270 5776950 PCT