Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0873 ATGAAATCTCACACTAATCTCACAACATTAAAATCATCATTGATAGAAATTGATGAGGATTACAATTTCTTCCCGGACCTTGATTTTGATCTAGTCGATGAGGAAGATTTTCTTTCACATGAGTTAATAGCARGTGAGGATCTTCAAGGGAAGTCTGCACTACAGGACCAATCTTTATCTGCAGAGTGCAATTCCAAAGAGCTAAGTAATTGTTGCACCGATGAAATGATGAGTTTTGAAGAGATGCTAAGAAACATCAACGATGAAACCTTTTCACCCAAACTTTCTTCATCATCTTCTCAGATTCTGTCCTTTGATAACTCAGACTCATTATCATCATCTCCACCCAATAATACGACACAGTTTTATGAGTTGAAAAATAGCTTAAACCAAAGGCAAGACTCAGTTGAAACTCCAAATAATAATAATAATAAAAAGAGTGATTCCTTGAATACACAAAATGTGGAAGCAAAGAGTACCTCAACACTTGGTAAGAGGTCACCATCTCATGCTCACGATCATATCATAGCTGAGAGAAAGAGAAGAGAGAAGATCAGTCAGAGTTTCATTGCTCTTGCAGCCCTTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGGGACTCTATCAAGTATGTGAAAGAGCTGAAAGAGCGTTTGGCAGTGCTCGAAGAAGAATCCAAGAAAACAAAGGCTCTGCCTACGGTGGTTCTGAACAAAGCAGAACAACTCCATGCTCATGGTGCTGCTGTGTTCTCCTCATTATGCGAAGAAGAGACCATTGATGGTCTTCCACAGGTTGAAGCAAGAGAGTGGGGGCAACAAGTGTTGCTTCGAATCCACTGCTGGAAGGAAGAGGGCATTTTGGTCAGAATATTGTCTGAGATTCAAAGCCTTCAATTGATGGTTCTTAATAGCAGTGTCTTATCATTTGGAGATTCCATTCTTGACATAACCATCATTGTTCAGGCGGGCGAAGGTTACAACTTGACCCTTAATGAACTTGTCAAGAACCTACGCATGGCTACGTTGAAACTCATGTCATAG 1053 0.4055 MKSHTNLTTLKSSLIEIDEDYNFFPDLDFDLVDEEDFLSHELIAXEDLQGKSALQDQSLSAECNSKELSNCCTDEMMSFEEMLRNINDETFSPKLSSSSSQILSFDNSDSLSSSPPNNTTQFYELKNSLNQRQDSVETPNNNNNKKSDSLNTQNVEAKSTSTLGKRSPSHAHDHIIAERKRREKISQSFIALAALVPGLKKMDKASVLGDSIKYVKELKERLAVLEEESKKTKALPTVVLNKAEQLHAHGAAVFSSLCEEETIDGLPQVEAREWGQQVLLRIHCWKEEGILVRILSEIQSLQLMVLNSSVLSFGDSILDITIIVQAGEGYNLTLNELVKNLRMATLKLMS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0873 350 MobiDBLite consensus disorder prediction 105 178 - -
Amo11g0873 350 Gene3D - 161 234 IPR036638 GO:0046983
Amo11g0873 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 231 IPR036638 GO:0046983
Amo11g0873 350 MobiDBLite consensus disorder prediction 105 166 - -
Amo11g0873 350 PANTHER BHLH TRANSCRIPTION FACTOR 26 350 - -
Amo11g0873 350 SMART finulus 175 224 IPR011598 GO:0046983
Amo11g0873 350 Pfam Helix-loop-helix DNA-binding domain 174 218 IPR011598 GO:0046983
Amo11g0873 350 Coils Coil 208 235 - -
Amo11g0873 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Amo11g0873 350 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 26 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0873 Amo-Chr11 23345826 23351325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0873 98 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.434 2.75e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo11g0873 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0873 - - aip:107617512 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1422 01 26734862 26740435 Amo11g0873 11 23345826 23351325 hybridization
Amo05g0494 05 5754024 5756095 Amo11g0873 11 23345826 23351325 PCT
Amo11g0873 11 23345826 23351325 Amo05g0494 05 5754024 5756095 PCT