Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0858 ATGCCAGTTCCACTTGCTCCTTATCCAACACCACCGGCTCCACATACTCCTCCATCCGCAAATGGTCAACAGAGCCAACTTGTGTGTTCTGGCTGTAGAAACCTTTTGCTCTATCCGGTTGGAGCCTCCTCTGTTTGCTGTGCTGTTTGCAATGCAGTCACCGCCGTGCCGCCTCCCGGAACGGAAATGGCCCAGTTAATCTGTGGAGGCTGCCATACATTACTAATGTACATCCGTGGCGCAACAAGTGTCCAATGCTCATGCTGTCACACTGTGAATCTAGCCATGGAAGGCATCAACAAGCATCACAGAGCAGAAGTTCAGCAACTAAATCAAACTATATATAGAGCAAAGTTAAATGATACAGAGACTCTACTATCTTGGTTTTGCTAG 393 0.4784 MPVPLAPYPTPPAPHTPPSANGQQSQLVCSGCRNLLLYPVGASSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLAMEGINKHHRAEVQQLNQTIYRAKLNDTETLLSWFC* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0858 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Amo11g0858 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Amo11g0858 130 PANTHER PROTEIN LSD1 1 101 IPR040319 -
Amo11g0858 130 PANTHER PROTEIN LOL1 1 101 - -
Amo11g0858 130 MobiDBLite consensus disorder prediction 1 20 - -
Amo11g0858 130 MobiDBLite consensus disorder prediction 1 18 - -
Amo11g0858 130 Pfam LSD1 zinc finger 29 53 IPR005735 -
Amo11g0858 130 Pfam LSD1 zinc finger 68 92 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0858 Amo-Chr11 20286034 20287743 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Amo11g0858 zf-LSD1 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0858 - - rcu:8284618 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1473 01 29814515 29816826 Amo11g0858 11 20286034 20287743 hybridization
Amo05g0480 05 5556749 5559012 Amo11g0858 11 20286034 20287743 PCT
Amo05g0547 05 6344734 6348215 Amo11g0858 11 20286034 20287743 PCT
Amo11g0858 11 20286034 20287743 Amo05g0480 05 5556749 5559012 PCT
Amo11g0858 11 20286034 20287743 Amo05g0547 05 6344734 6348215 PCT