Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0829 ATGCAAAAATCTTCAAATTATGGTGTTCTTAGTGTTGAGTCCAGGTGCTCATTAACGCTGACGCTCTCTTCGCACTCTTCCTCTCTCTCGCTCGTTCCATCTGCCAACACTCAAACCTCCGTGGCTCTTTTCTGCCTCCACACTCATCCTGCTCGAGGAAGAAACAAAGACACCGTCGCAGGCGCAGCATCGACACCGCTGCAGACCCTTCTTTGTTCGATTTCAAGAAGGACGGGCCTTGTTTTGTGCAACACATACATCAAAACAACTACCATGGGACATGAATCCCGAAAGCTCTTGGATGAATATGAGGTGTCAGAGATTCTAGGAAGAGGTGGATTCTCTGTTGTTAGGAAAGGCATAAAAAAATCAAGCAGTGATGAGAAAACTCATGTTGCCATAAAGACACTAAGAAGAGTAAGTGCCTCTACTACAACCCCTGGTTGTTTACCAAGAGAGAGGAGCAACATGGGGTTTCCCACATGGAGACAGGTTTCAGTATCAGATGCTCTTCTCACCAATGAGATCCTTGTGATGAGGAAGATAGTCGAAAATGTGTCGCCACATCCGAATGTGGTTGACCTCTATGATGTTTATGAGGACTCGAATGGTGTTCATCTTGTTTTGGAGCTGTGTTCTGGCGGTGAGCTGTTTGATCGCATTGTGGCACAGGATAGGTACTCAGAGACTGAGGCTGCGACAGTTATTCGCCAGATTGCGGCGGGCTTAGAGGCTATTCATAAAGCAAACATTGTCCATAGAGACTTGAAGCCTGAGAATTGCTTGTTCTTGGACAAGAGGAAGGATTCTCCTCTAAAGATCATGGATTTCGGTTTGAGCTCTGTTGAAGAGTTTACTGATCCAGTTGTTGGTTTGTTTGGTTCCATTGATTATGTTTCACCGGAGGCACTTTCTCAAGGAAAGATAACAGCTAAGAGTGACATGTGGTCTCTAGGGGTAATTTTGTACATCTTATTATCTGGATATCCGCCTTTCATTGCTCAGTCTAATCGCCAAAAACAACAAATGATAATGAATGGGAACTTCAGCTTCTATGAGAAGACATGGAAGGGCATTTCTCAATCAGCAAAGCAATTGATTTCGAGTCTTCTGACAGTTGATCCTAGTAGGAGACCTAGTGCGCAGGAGCTCCTGAGTCATCCATGGGTCATAGGTGATGTAGCGAAAGATGATCAGATGGACCCTGAGATTGTCTCAAGGTTGCAAAGCTTCAATGCTCGTCGCAAGCTCCGGGCAGCTGCAATTGCAAGCGTATGGAGCACCACAGTGTTCTTGAGAACRAAGAAACTGAAATCCTTGATAGGATCCTATGATCTTACAGAAGAGGAAATTGAAAATCTTAGGATACACTTCAAGAAGATATGTGGAAATGGGGACAATGCCACGCTCTCTAAGTTTGAGGAGGTACTGAAAGCAATAAATATGCCATCACTAATTCCTCTAGCACCACGCATATTTGACTTGTTCGACAACAACCGTGATGGAACGATGTATGATGCAGATCGATCCGGGTGTATCACAAAGGAAGAAGTAGCATCCATGCTTAGAGCTTTGCCGGATGACTGTCTTCCAGTTGATATCACGGAACCTGGCAAATTGGACGAGATTTTCGACAGAATGGATGCCAACAGTGATGGAAAAGTCACCTTTGAGGAATTCAAAGCTGCTATGCAGAGAGATAGCTCCCTCCAAGATGTAGTCCTTTCTTCCCTTCGCCCACTATAG 1746 0.4479 MQKSSNYGVLSVESRCSLTLTLSSHSSSLSLVPSANTQTSVALFCLHTHPARGRNKDTVAGAASTPLQTLLCSISRRTGLVLCNTYIKTTTMGHESRKLLDEYEVSEILGRGGFSVVRKGIKKSSSDEKTHVAIKTLRRVSASTTTPGCLPRERSNMGFPTWRQVSVSDALLTNEILVMRKIVENVSPHPNVVDLYDVYEDSNGVHLVLELCSGGELFDRIVAQDRYSETEAATVIRQIAAGLEAIHKANIVHRDLKPENCLFLDKRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITAKSDMWSLGVILYILLSGYPPFIAQSNRQKQQMIMNGNFSFYEKTWKGISQSAKQLISSLLTVDPSRRPSAQELLSHPWVIGDVAKDDQMDPEIVSRLQSFNARRKLRAAAIASVWSTTVFLRTKKLKSLIGSYDLTEEEIENLRIHFKKICGNGDNATLSKFEEVLKAINMPSLIPLAPRIFDLFDNNRDGTMYDADRSGCITKEEVASMLRALPDDCLPVDITEPGKLDEIFDRMDANSDGKVTFEEFKAAMQRDSSLQDVVLSSLRPL* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0829 581 Pfam Protein kinase domain 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0829 581 SMART serkin_6 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0829 581 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Amo11g0829 581 SMART efh_1 539 567 IPR002048 GO:0005509
Amo11g0829 581 SMART efh_1 491 525 IPR002048 GO:0005509
Amo11g0829 581 ProSitePatterns EF-hand calcium-binding domain. 548 560 IPR018247 -
Amo11g0829 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Amo11g0829 581 Gene3D - 434 503 - -
Amo11g0829 581 SUPERFAMILY EF-hand 434 571 IPR011992 -
Amo11g0829 581 ProSiteProfiles Protein kinase domain profile. 103 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0829 581 Pfam EF-hand domain pair 504 565 IPR002048 GO:0005509
Amo11g0829 581 ProSitePatterns Protein kinases ATP-binding region signature. 109 135 IPR017441 GO:0005524
Amo11g0829 581 Gene3D Phosphorylase Kinase; domain 1 96 218 - -
Amo11g0829 581 CDD EFh 504 565 IPR002048 GO:0005509
Amo11g0829 581 ProSiteProfiles EF-hand calcium-binding domain profile. 535 570 IPR002048 GO:0005509
Amo11g0829 581 ProSiteProfiles EF-hand calcium-binding domain profile. 504 528 IPR002048 GO:0005509
Amo11g0829 581 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 97 565 - -
Amo11g0829 581 Gene3D Transferase(Phosphotransferase) domain 1 219 433 - -
Amo11g0829 581 CDD STKc_CAMK 103 389 - -
Amo11g0829 581 Gene3D - 504 575 - -
Amo11g0829 581 SUPERFAMILY Protein kinase-like (PK-like) 95 411 IPR011009 -
Amo11g0829 581 PANTHER SERINE/THREONINE-PROTEIN KINASE 97 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0829 Amo-Chr11 18702015 18709159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0829 171 568 EF-hand Containing Proteins AT3G10660 36.557 7.69e-73 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Amo11g0829 Pkinase 3.8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0829 K13412 - gmx:732616 840.876