Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0802 ATGGCCTCCAACATCAGAACATTACTAAATCAAGATATAGTGGTGGTGTTGACGCATTCGACGTGCTTTCCACATAATAAAATCAACCTGTCAGAGCCAGATCTCAGTGAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGGATTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGAAATTGGGTGGTGAAGGTGGTTGTGCCCCGAAAATAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATAAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAACAGCAATATCCACTAAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTAGTAGGAGGAAGAACCAGGTATTAATTATTCTTTTGTTCCTATTATCAATCTAG 651 0.404 MASNIRTLLNQDIVVVLTHSTCFPHNKINLSEPDLSENLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSDFVAGSGEYGGEKLGGEGGCAPKIGEAQGSDDNDGWDDDEGYGWNKNVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLSRRKNQVLIILLFLLSI* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0802 216 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Amo11g0802 216 MobiDBLite consensus disorder prediction 113 136 - -
Amo11g0802 216 Gene3D - 145 206 - -
Amo11g0802 216 PANTHER PROTEIN PHOSPHATASE RELATED 45 206 - -
Amo11g0802 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 198 IPR000571 GO:0046872
Amo11g0802 216 MobiDBLite consensus disorder prediction 61 77 - -
Amo11g0802 216 SUPERFAMILY CCCH zinc finger 172 201 IPR036855 GO:0046872
Amo11g0802 216 MobiDBLite consensus disorder prediction 61 169 - -
Amo11g0802 216 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 45 206 - -
Amo11g0802 216 SMART c3hfinal6 172 199 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0802 Amo-Chr11 17598239 17599371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0802 169 201 C2H2 Transcription Factor Family AT1G29570 54.545 6.96e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo11g0802 zf-CCCH 1.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0802 - - adu:110280340 261.151