Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0790 ATGAGCAATCTGACTAAGGAAGAGTTTGTGCACGTTCTTCGCCGACAAAGCACTGGGTTTCCAAGAGGAAGCTCTAAATATAGAGGTGTAACTTTGCACAAATGCGGAAGATGGGAAGCTCGAATGGGACAATTTTTAGGGAAAAAGTACGTCTATCTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCCTATGATAAAGCAGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTACGAAAATGAGCTTAATTCCGTAGAACCCACAGGTAATGCTGCAGATCACAATCTAGATTTAAGTTTGGGCAATTCAAGTTTCAAATCTAGCAACAATAATCGAGCATTGGGGAATCACACCACAAATGTTCAAGATCATCACCAGCAGCTCATGCCATCTGAATCCAATTGGCGAAATGGTGCAAGCAAGCCTAAGCTGGTGAATATCCTACCAAAACCGTGCAATAGAAACATGGAAGCACATGGAGGAAGGGATTTGCACGGAGAGAGTGAAGCCTTGAGGATGCTGAGTCAAACCCACATCCATTCTACTACTTGTTCAGCATCTAATGAAACGCAAAGATATGGACCCTACAGGTCCCCAGGGGAGCCTCAAATGCTTCACAATTTTGCACATCTTCAACCACCAAATTTTTATTTCTCCAGCAGCAGTAGTAATGGAGGTCGCATTGGGAATGATCTTTCATTATCAATGGCGGATCATCATCAACAACAGTTGCAACCAGGACCTCCACACCATTATTTGGCCACTGCTGCAGCATCATCAGGATTCCCACCACAGATTAGTAGACCCTCTTCTCATCACCAAGGTTGGCTGCAGAAAAATGGCTTCCACACAATTATGAGACCCTCCTAA 897 0.4437 MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSVEPTGNAADHNLDLSLGNSSFKSSNNNRALGNHTTNVQDHHQQLMPSESNWRNGASKPKLVNILPKPCNRNMEAHGGRDLHGESEALRMLSQTHIHSTTCSASNETQRYGPYRSPGEPQMLHNFAHLQPPNFYFSSSSSNGGRIGNDLSLSMADHHQQQLQPGPPHHYLATAAASSGFPPQISRPSSHHQGWLQKNGFHTIMRPS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0790 298 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Amo11g0790 298 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Amo11g0790 298 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 296 - -
Amo11g0790 298 MobiDBLite consensus disorder prediction 109 147 - -
Amo11g0790 298 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Amo11g0790 298 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Amo11g0790 298 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Amo11g0790 298 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 296 - -
Amo11g0790 298 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677
Amo11g0790 298 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Amo11g0790 298 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Amo11g0790 298 MobiDBLite consensus disorder prediction 270 298 - -
Amo11g0790 298 MobiDBLite consensus disorder prediction 270 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0790 Amo-Chr11 16965440 16969677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0790 26 94 AP2-EREBP Transcription Factor Family AT4G36920 50.000 3.95e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo11g0790 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0790 K09284 - gmx:100792442 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0790 11 16965440 16969677 Amo11g0790 11 16965440 16969677 ECH
Amo01g1161 01 16597189 16603161 Amo11g0790 11 16965440 16969677 hybridization
Amo05g0823 05 10165754 10169286 Amo11g0790 11 16965440 16969677 PCT
Amo11g0790 11 16965440 16969677 Amo05g0823 05 10165754 10169286 PCT