Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0748 ATGGTGGATAGGATGGTGAAGAAGGAGGTTGAACAACATGATGAACAAACTGTGACTCTGGGTTTCTATGGAGATGAGCAAGCTCAACGGAGGTTTTCTATAAACATGATGGATAAACAAAACAAGGCCACGGATAACAAAAACAAGGTCTTAAACTCGGATATAAAGCCCGTCACAAATGGCGAGGCACAAAAATTTGCAAGCTCTATGAAGGCTACAACAGCAGAAGCAACATCCTCTCGTGGTGAGGCTAAGTCATCTGCTGTAATTCGAGCAGAAGAGATCCGATCGAGTTTGCAAGGCGAATACCCGAGTTTTGTGAAGTCATTAGTGAGATCACATGTTGCTAGTTGTTTCTGGATGGGTCTGCCTGTGGCATTCTGTAAGAAGCACTTGGCGGATAAGGATACAACGATGACTTTGGAAGATGAATATGGCAAAGAATACAAGATGAAGTACATCGCATGCAAAACGGGATTGAGCGCTGGTTGGAGACAGTTTTCTGCTGTGCATAAGTTGCAGGAGGGTGACGTCTTGGTCTTCCAGTTAGTTGAACCTGCCAAGTTTAAGATTTATATAGTAAGAGCAGATAATTTAAGGGAAGTAGATGGGGCCCTTTCGCTTATGAATCTAGACAGTTATGCAAGACAAAAGCAGAGAGAGAAAGAAAACCCAGAGAATGATGCTTTAGATGCTAGTATTACAAAGAGAAAACCCGGAAAATCTGTCGCAATTGACGTCCAAAAGAAAAAGCCATCAAAGCCAGGGCATAAATCTGTGCAACCGGCGCAATCCGAAAACGATAGCGAAGAAGCACTCTCAGAAGTATTTGAGGGGTTTAGAACGCTTGACTTCAAAGATGTCAAAGGATTTGAAAACTTTAGCATCATAGTGGATGGTGTGGTATTAGATGCCGAGTTCTCTAATGAGGTTAGAAACAAATACTACAAACTATGTTATAGCCAACGTGCTTTTCTTCATGATAACCTCACCAGGGGGTTGAACTATAAGCTAGTTGTTGGAATCATAACCGAGACTGTAAACATTGCGGACGCCATCAAAGTTAGCGTGCTAGCTACGCCACGATTCGACTTCTCGAATTGGGACAAGACCCTGCTTGCCTTTGAGCATATGGGCATGAATGTTGAGTTCTTGAGAGTGAAGTTGCGGCGATTGGTGAGCATTGCATATGAGACTGATGATGCCTTAGAAACCAGGAGATACTTCCAGTATAAAAATCAACACTCAAGAGCAGATGCGGAAATAAAGAATATGGAGTCCAAGCTGGAAGATTTGAAAGGAGCTTGTAAGGATTTTAGTGCTTACATTAAGAGTTTGAAGCAAAAAGCTGAAACTCATCAAAACAAGTTTCAGAAAGAGGTTGCTTCTCCTTGGTGA 1398 0.4227 MVDRMVKKEVEQHDEQTVTLGFYGDEQAQRRFSINMMDKQNKATDNKNKVLNSDIKPVTNGEAQKFASSMKATTAEATSSRGEAKSSAVIRAEEIRSSLQGEYPSFVKSLVRSHVASCFWMGLPVAFCKKHLADKDTTMTLEDEYGKEYKMKYIACKTGLSAGWRQFSAVHKLQEGDVLVFQLVEPAKFKIYIVRADNLREVDGALSLMNLDSYARQKQREKENPENDALDASITKRKPGKSVAIDVQKKKPSKPGHKSVQPAQSENDSEEALSEVFEGFRTLDFKDVKGFENFSIIVDGVVLDAEFSNEVRNKYYKLCYSQRAFLHDNLTRGLNYKLVVGIITETVNIADAIKVSVLATPRFDFSNWDKTLLAFEHMGMNVEFLRVKLRRLVSIAYETDDALETRRYFQYKNQHSRADAEIKNMESKLEDLKGACKDFSAYIKSLKQKAETHQNKFQKEVASPW* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0748 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 28 400 - -
Amo11g0748 465 MobiDBLite consensus disorder prediction 217 270 - -
Amo11g0748 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 400 IPR044837 -
Amo11g0748 465 MobiDBLite consensus disorder prediction 217 235 - -
Amo11g0748 465 CDD B3_DNA 104 195 IPR003340 GO:0003677
Amo11g0748 465 MobiDBLite consensus disorder prediction 66 87 - -
Amo11g0748 465 Coils Coil 408 435 - -
Amo11g0748 465 SUPERFAMILY DNA-binding pseudobarrel domain 99 197 IPR015300 -
Amo11g0748 465 Pfam B3 DNA binding domain 106 195 IPR003340 GO:0003677
Amo11g0748 465 Gene3D - 83 199 IPR015300 -
Amo11g0748 465 ProSiteProfiles B3 DNA-binding domain profile. 106 197 IPR003340 GO:0003677
Amo11g0748 465 SMART B3_2 106 197 IPR003340 GO:0003677
Amo11g0748 465 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0748 Amo-Chr11 15405679 15408724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0748 83 228 B3 DNA Binding Superfamily AT3G19184 42.177 8.12e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo11g0748 B3 5.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0748 - - gmx:100819237 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0748 11 15405679 15408724 Amo11g0748 11 15405679 15408724 ECH
Amo01g1094 01 14627655 14629802 Amo11g0748 11 15405679 15408724 hybridization