Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0736 ATGTGTCCGACACGCGGACACGATAACTCAGCAAAGTGTATGTGCTTCGTAGATAAGAACACTATTCTCTCCAATGTTCTGGAAACGGAGCCAGACCAACCGCCAGCCACCGTCACCGTCCCTCATCGCCGAACTCTTCTCCTCCGGTATAGGGTGCTGTCGCCGCCGGCCGGGACAAAGCGTGGGTGCCGTCTCACTCTTCTCATCGCAGAACACTTCGTAGTTCTCATCGCTCCTCTTCTCGTCGCCGTCGCACGAGGACGCGTTGATCCGGTGGCGTTGCCGTCGCGAAGGTTGATCGGTCAGTCATCGTCTTTTCGAGCTCTCTCTCTCTCTCTGTCTGAAGCGCCAGCATCCCTCCTCGAGCTGTCTGTTGCTCTGTGTCCGTGCTCACTTTCCTTTCTCCGTTGCCGTCACTTCCCACTCATCGCCGTCACTTGCCTTCCTCCTTCACCGGCAGTAAGCACTGCTGCTTCAATTTATTTTTGCTTGTTTTCTTTTGCTCGCGGAAGCACTAACGGCTTCTGGCCACAGCATCGCCGGAGAAGCAATATCAGAGGTAACAGAGAAGGGTTGTGCACCGCTGCGGCGCTGCCGGAAGAGAAGGAAGGAAAAACCAAAATGGGCTCTGTGGCTACACCACTTCTGACTATTCAATTTCCTGCTGCTATTACGGAAACCATCAGGAACTCCAAATTGGGTGCAAGTTTCAATAAAATCTGTAGAAGTACAGGAAAAGGAATACTCAGTTTCTCTTTTGCTGGTGGCAACCACATCGTTGGGGTTAACTTTGCAATCAAAGCAGGCAAAGGAGTATCAAATTTGAAAACTGGGCAACAAGAAGGAACTTGGGAGGAACCAGATATTGACAGTGACAGTGAATCTGATGGTGAAGATGAGGAAGCTGAGGATGAGAACCTTGGATTTGAAAGCGATTGGGAGGGGGAAGAAACAAAGACTTCAGCTACTACTGTTGCAAATATAAATTCAACTGACACAAACGAGGAACACGTTAAGAGAGAGATTGAACAGCTTTTGGACCCAGATGAAAGAGCAATATTGCAACAGAATGTGACTCCTAACTTGGAAAAAATATCAACTGAAAAATGGATCCCTTTGCACACCCTTGCTCTGTCAATGCAGATGAGTTGCATGGATAAGCTTCTTGAAGATGGTAATTTGATCAAACAGGAAGGTCTCACTGCACTTCATAAGGCAATTATAGGCAAAAAAGAAGCTGTGATAAGCCATCTTTTAAGGAAAGGTGCAAGTCCTCATGTGAAGGACAAGGTTGGAGCTACTCCACTTCATTATGCGGTTCAAGTTGGTGCCAAGCAAACTGTGAAATTATTAATCAAGTATAATGTCGATGTCAATGTTGCAGATAATGAAGGTTGGACTCCATTGCACGTTGCCGTTCAAAGTAGAAACAGAGATATAGCAAAAATTTTGTTAGTCAATGGTGCAGATAAAACAAGGAAAACTAAGGGATAA 1494 0.4659 MCPTRGHDNSAKCMCFVDKNTILSNVLETEPDQPPATVTVPHRRTLLLRYRVLSPPAGTKRGCRLTLLIAEHFVVLIAPLLVAVARGRVDPVALPSRRLIGQSSSFRALSLSLSEAPASLLELSVALCPCSLSFLRCRHFPLIAVTCLPPSPAVSTAASIYFCLFSFARGSTNGFWPQHRRRSNIRGNREGLCTAAALPEEKEGKTKMGSVATPLLTIQFPAAITETIRNSKLGASFNKICRSTGKGILSFSFAGGNHIVGVNFAIKAGKGVSNLKTGQQEGTWEEPDIDSDSESDGEDEEAEDENLGFESDWEGEETKTSATTVANINSTDTNEEHVKREIEQLLDPDERAILQQNVTPNLEKISTEKWIPLHTLALSMQMSCMDKLLEDGNLIKQEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKVGATPLHYAVQVGAKQTVKLLIKYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLVNGADKTRKTKG* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0736 497 ProSiteProfiles Ankyrin repeat profile. 431 463 IPR002110 GO:0005515
Amo11g0736 497 SMART ANK_2a 431 460 IPR002110 GO:0005515
Amo11g0736 497 SMART ANK_2a 464 493 IPR002110 GO:0005515
Amo11g0736 497 SMART ANK_2a 398 427 IPR002110 GO:0005515
Amo11g0736 497 SMART ANK_2a 368 397 IPR002110 GO:0005515
Amo11g0736 497 MobiDBLite consensus disorder prediction 275 322 - -
Amo11g0736 497 MobiDBLite consensus disorder prediction 285 311 - -
Amo11g0736 497 ProSiteProfiles Ankyrin repeat profile. 398 430 IPR002110 GO:0005515
Amo11g0736 497 Pfam Ankyrin repeats (3 copies) 415 494 IPR002110 GO:0005515
Amo11g0736 497 ProSiteProfiles Ankyrin repeat region circular profile. 398 430 - -
Amo11g0736 497 SUPERFAMILY Ankyrin repeat 359 495 IPR036770 -
Amo11g0736 497 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 299 496 - -
Amo11g0736 497 ProSiteProfiles Ankyrin repeat region circular profile. 431 463 - -
Amo11g0736 497 ProSiteProfiles Ankyrin repeat profile. 464 496 IPR002110 GO:0005515
Amo11g0736 497 ProSiteProfiles Ankyrin repeat region circular profile. 464 490 - -
Amo11g0736 497 Gene3D - 336 497 IPR036770 -
Amo11g0736 497 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 299 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0736 Amo-Chr11 15067587 15074214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0736 412 489 Ion Channels AT2G25600 43.590 1.27e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0736 - - lja:Lj0g3v0067589.2 360.533