Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0714 ATGTCATCCACGAATTCGCCATGCGCGGCGTGCAAGTTCCTTCGTCGGAAGTGCACACAAGAGTGCATTTTCGCACCATATTTCCCGCCGGACAACCCACAGCGCTTCGCAAGCGTCCATCGCGTCTTCGGCGCCAGCAACATCGGCAAGATCCTCAACGATCTTAGCCCCTGCCAGCGGGAAGATGCGGTGACGTCCCTTGCGTTCGAGGCGGAGGCGCGCCTCGACAGCCCAGTGTACGGGTGCGTCAGACACATCGTCATCCTCCAACAGCGCCTGCACCAAATACAAATGGACCTCCTCCACGCCAAGAGCGAACTCAGCGCCTACATCAACCCACAAGGCATTCAGGGTCCGTTCTCCCCTCATGGAATTCGAGGGCTACCACTTTACCCTCAAGGAAAGCCGCCGTCTTCGTCTGCGGCTCTTTTCGGCCCGCCTTACGGCCCAAATGTTATTCAGTCTTTGATGCCACCATCTTCTGTGCAGCATAATGGAACAATGAATGCTAATGCCGACCTGGATCCAGAGCAGCGCGAGTTGTTGGAGGCCCAACAACTCGCAGCACAGCAACATGACATGATGGTCAGAAACTATGAACAGCAGCAGCAGCAGCAGGAGTATCTAAGATACAACGCTGCTACTGGGATTATTGAACCTGTGGCAGCTGCAAGTCCGGTTTCAGTTGTCACAGCCGACGGTGATGGCCGTGGAAATGGAGTTTTTGCCCAGATGGCTGCACATTCAGGCGGTCAAGGAGGTGAGCTGACACCTTGTTTGGGTTTGGGGACATTTGACAGTGGTGGAACTTATCACCATCAGTTGCAACAAGAACCACCACAACATGGAGGAGTAGGGGAAAATTATGTTGGTCTTGCAAATCGTCATCACTATCCTGTTGAGGCGCAATTCCTGCTCCCATCACAACAACAACAGTCAGAGAGTGAGGACTTTGTGGCTTTTGCTTATAATAATAAACAGGCGAGAGAGCAAGAAGTAGTTGAGGAAGCTGGTGGCTACTGGAAAGTTGCAACGGACGTGGAAATGTACTACAATAACCACTTCCTTATGCAGCATGATCTCCTTAGAGAGCTAGCAAACCATCAAAGCAACCAAGAACCGATCGAGCGAAGGAAAAGGCTGGCGATCGACTTGACTCAGAATGGGAAAAATTGTCCCAACTGGTTGGTAGGCCAGAATCAGCCGGGTATCGTTTCTCGCACGCTGTCATTCTTATCTGTAAGGGGGACACAACAACAACAGAAGCAGGAACAAGTCACTGCTCGCATAATGTTTGTTTCAACTGATGAAACATTCACTCCTGACTGGTACAACATGAACCATGATGAAACTGAAGTTCTGATTTTAAATATCCATTCAAACAAGTATACATTTCCGGATTTCATTCAGAAAATGAGAAAACTCAAAGTTCTCATAGTCACAAATCAGGGTTTCCATCCTTGTGAATTGAACAACTTTGAGGTACTTGGTTCATTACCATGCTTGAAAACGATTAGACTGGAAAAGGTTTCGATTCCTAGCCTCTGCAAATTTAACAAACTAAGTCTTTTTTAA 1575 0.487 MSSTNSPCAACKFLRRKCTQECIFAPYFPPDNPQRFASVHRVFGASNIGKILNDLSPCQREDAVTSLAFEAEARLDSPVYGCVRHIVILQQRLHQIQMDLLHAKSELSAYINPQGIQGPFSPHGIRGLPLYPQGKPPSSSAALFGPPYGPNVIQSLMPPSSVQHNGTMNANADLDPEQRELLEAQQLAAQQHDMMVRNYEQQQQQQEYLRYNAATGIIEPVAAASPVSVVTADGDGRGNGVFAQMAAHSGGQGGELTPCLGLGTFDSGGTYHHQLQQEPPQHGGVGENYVGLANRHHYPVEAQFLLPSQQQQSESEDFVAFAYNNKQAREQEVVEEAGGYWKVATDVEMYYNNHFLMQHDLLRELANHQSNQEPIERRKRLAIDLTQNGKNCPNWLVGQNQPGIVSRTLSFLSVRGTQQQQKQEQVTARIMFVSTDETFTPDWYNMNHDETEVLILNIHSNKYTFPDFIQKMRKLKVLIVTNQGFHPCELNNFEVLGSLPCLKTIRLEKVSIPSLCKFNKLSLF* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0714 524 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Amo11g0714 524 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 229 - -
Amo11g0714 524 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Amo11g0714 524 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0714 Amo-Chr11 14349650 14352842 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0714 1 212 AS2 family AT5G66870 47.748 1.98e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo11g0714 LOB 2.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0714 - - aip:110262357 591.652