Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0710 ATGTCGTCGACGAATTCCCCATGCGCGGCGTGCAAGTTCCTTCGTCGGAAGTGCACACAAGAGTGCATTTTCGCACCATACTTCCCGCCGGACAACCCACAGCGCTTCGCATGCGTCCATCGCGTCTTCGGCGCCAGCAACATCGGCAAGATCCTCAACGATCTTAGCCCCTGCCAGCGGGAAGATGCGGTGACGTCCCTTGCGTTCGAGGCGGAGGCGCGCCTCGACAGCCCAGTGTACGGGTGCGTCAGACACATCGTCATCCTTCAACAGCGCCTGCAACAAATACAAATGGACCTCCTCCACGCCAAGAGCGAACTCAGCGCCTACATCAACCCACAAGGCATTCAGGGTCCGTTCTCCCCTCATGGAATTCGAGGGCTCCCACTTTACCCTCAAGGAAAGCCGCCGTCTTCGTCTGCGGCTCTTTTCGGCCCGCCTTACGGCCCAAATGTTATTCAGTCTTTGATGCCACCATCTTCTGTGCAGCATAATGGAACAATGATTGCTAATGCCGACCTGGATCCAGAGCAGCGCGAGTTGTTGGAGGCCCAACAACTCGCAGCACAGCAACATGACATGATGGTCAGAAACTATGAACATCAGCATCAGCAAGAGTATCTAAGATACAACGGTGCTACTGGGATTATTGAACCTGTGGCAGCTGCAAGTCCGGTTTCAGTTGTCACAGCCGACGGCGATGGCCGTGGAAGTGGAGTTTTTGCCCAGATGGCTGCACATTCAGGCGCTCAAGGAGGTGAACTGGCACCTTCTTTGGGTTTGGGGACATTTGACAGTGGTGGAACTTATCATCATCAGTTGCAACAACAACCACCACAACATGGAGGAGTAGGGGAAAATTATGTTGGTCTTGCAAATCGTCATCACTATCCTGTTGAGGCGCAATTCCTGCTCCCATCACAACAACAACAACCGTTAGAGAGTGAGGACTGTAAGAGTATAGTGAGAGGTTGTAATGGTTCACCTCTGGCTCTAAAAGTTATTGGTGGATCCCTGTGTCATCATCCTTATGAGTTCTGGCAAACAATGAAGGAACGGCTTAAATCCAACAAAGACTTGGATTCTCACCTTCAGAATTGTCTAGACATAGTGGAAGACGACAAGGAGAAGGAGTGTTTCATGGACCTAGGTCTGTTCCCTGAAGATCAAAGGATCCGCGTTCCTTTGCTGAATGACATGTGGACAGAACTGCATGAACTTGATGAGGATGGAGTAAAAGCAATGAATATTATACATAGTTTAAACTCCAAGAATTTGGCTAATCTCATTGTTACAAGGAAAGTTGCAACGGACGTGGAAATGTACTACAATAACCACTTCCTTATGCAGCATGATCTCCTTAGAGAGCTAGCAAACCATCAAAGCAACCAAGAACCCATCGAGCCAAGGAAAAGGCTGGCGATCGACTTGACTCAGAATGGGAAAAATTGTCCCAACTGGTTGGTAGGCCAGAATCAGCCGGGTATCATTTCTCGCATGCTGTCATTCTTATCTGTAAGGGGGACACAACAACAACAGAAGCAGGAACAAGACACTGCTCCCATAATGTTTGTTTCAACTGATGAAACATTCACTCCTGACTGGTACAACATGAACCCTGATGAAACTGAAGTTCTGATTTTAAATATCCATTCAAACAAGTATACATTTCCGGATTTCATTCAGAAAATGAGAAAACTCAAAGTTCTCATAGTCACAAATCAGGGTTTCCATCCTTGTGAATTGAACAACTTTGAGGTACTTGGTTCATTACCATGCTTGAAAAGGATTAGCCTGGAAAAGGTTTCGGTTCCTAGCCTCTGCAAATTGAGGAAGTGCGAAATCTGTCGCATTATATATGCACTGCCAAATTTAGTGGAGTTGAACATTGACTATTGCATGGATATGGTGGAATTGCCTTCTGATTTCTGTAACATTATGACCATGAAGAAGCTTAGTATCACTAACTGTCATAAGCTTTCTAAACTACCACCAGAAATCGTTATGCTGAAGAATCTGGAAGTTTTGAGACTTAGTTCCTGCTCTGATTTGAAAGAGATGCCAAAATCTGTTGGAAGGCTTCAACAGATTTGGTGTCTGACATCGGCGAGTTGCATATGCACACCGGAGTGCATTTTCGCACCGTACTTCCCAGCGAACAACCCAGAGCGCTTCGAATGCGTCCACCGCGTCTTCGGCGCCAGCAACGTCGGCAAGATCCTCAACGAGCTACCTCCATCCCAGCGCGAGGATGCGGTGAAGTCCCTTGCGTTCCAGGCGAAGGCACGCCTTCGCAACCCGGTCTATGGCTGCACCTTCCAAGTCTCCATCCTCCAGCAGCTCCTCCGCCAGAGACGTGCCGTCCTCGAAAACGCCAAGAGAGAACTTAGCGCCTACATCAACCCGCAAGCCATTCAAGGTCCATTCAACCCTCAGGAAAAGCCTCTATCTTCATCTCCCGCCCATTTAGGCCCTTCCTGCTGCTCCAATATTGTACAGTATTCAGCCCATTTAAACCCATTCTACGATCCAAATGTTGTACACTCTTCAGTCCATTTGGGCCTATCGGACGGCCCAGATGATGAACCTTTTTTTAAGCCAGCTATCCAGTATAATGGGTCATTGGGTGGTGGTGGTGCTGTCCCGCAAGCGGACCCAGGGCAACAAGAGTTGTTGGAGGCCCAACAACTTGCTGCTGCTGTGGCATTCCGAGAACAGCAACTAAGATACAATGCTGCTGCTGGGATTGAACCTGTTGCGGCTGCAGCACCCTACGGCGGTAACGTCAGTGGAAGTGGAGTGTTTGGCCACATGGGTGCACCTTCAGGCGGTCAAGGAGGTGAGATGGCACCTTGTATGGGTTTGGGGACATTTGATAGTGGTGAAAGTTATCATTCACAATTGCAACAACCACCACAGCATGGAGTAGGGGGAAATTACGTCCTTGCAACTCAACATCACTACCCTCTTGAGGGCCACGAAAAGAGCGTGAAGTTGAGGGAAGCTGCCTACTGGTCATGGATTCTGAATAATCAGTAA 3039 0.4863 MSSTNSPCAACKFLRRKCTQECIFAPYFPPDNPQRFACVHRVFGASNIGKILNDLSPCQREDAVTSLAFEAEARLDSPVYGCVRHIVILQQRLQQIQMDLLHAKSELSAYINPQGIQGPFSPHGIRGLPLYPQGKPPSSSAALFGPPYGPNVIQSLMPPSSVQHNGTMIANADLDPEQRELLEAQQLAAQQHDMMVRNYEHQHQQEYLRYNGATGIIEPVAAASPVSVVTADGDGRGSGVFAQMAAHSGAQGGELAPSLGLGTFDSGGTYHHQLQQQPPQHGGVGENYVGLANRHHYPVEAQFLLPSQQQQPLESEDCKSIVRGCNGSPLALKVIGGSLCHHPYEFWQTMKERLKSNKDLDSHLQNCLDIVEDDKEKECFMDLGLFPEDQRIRVPLLNDMWTELHELDEDGVKAMNIIHSLNSKNLANLIVTRKVATDVEMYYNNHFLMQHDLLRELANHQSNQEPIEPRKRLAIDLTQNGKNCPNWLVGQNQPGIISRMLSFLSVRGTQQQQKQEQDTAPIMFVSTDETFTPDWYNMNPDETEVLILNIHSNKYTFPDFIQKMRKLKVLIVTNQGFHPCELNNFEVLGSLPCLKRISLEKVSVPSLCKLRKCEICRIIYALPNLVELNIDYCMDMVELPSDFCNIMTMKKLSITNCHKLSKLPPEIVMLKNLEVLRLSSCSDLKEMPKSVGRLQQIWCLTSASCICTPECIFAPYFPANNPERFECVHRVFGASNVGKILNELPPSQREDAVKSLAFQAKARLRNPVYGCTFQVSILQQLLRQRRAVLENAKRELSAYINPQAIQGPFNPQEKPLSSSPAHLGPSCCSNIVQYSAHLNPFYDPNVVHSSVHLGLSDGPDDEPFFKPAIQYNGSLGGGGAVPQADPGQQELLEAQQLAAAVAFREQQLRYNAAAGIEPVAAAAPYGGNVSGSGVFGHMGAPSGGQGGEMAPCMGLGTFDSGESYHSQLQQPPQHGVGGNYVLATQHHYPLEGHEKSVKLREAAYWSWILNNQ* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0710 1012 Gene3D Ribonuclease Inhibitor 543 706 IPR032675 -
Amo11g0710 1012 Coils Coil 775 795 - -
Amo11g0710 1012 Gene3D - 302 366 IPR042197 -
Amo11g0710 1012 Gene3D - 367 460 IPR036388 -
Amo11g0710 1012 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 311 708 IPR039203 GO:0050832
Amo11g0710 1012 PRINTS Disease resistance protein signature 325 339 - -
Amo11g0710 1012 PRINTS Disease resistance protein signature 668 684 - -
Amo11g0710 1012 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Amo11g0710 1012 Pfam Lateral organ boundaries (LOB) domain 706 792 IPR004883 -
Amo11g0710 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 372 IPR027417 -
Amo11g0710 1012 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Amo11g0710 1012 SUPERFAMILY RNI-like 543 701 - -
Amo11g0710 1012 ProSiteProfiles LOB domain profile. 695 796 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0710 Amo-Chr11 14271020 14280732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0710 707 840 AS2 family AT5G66870 51.493 9.16e-36 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo11g0710 LOB 6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0710 - - aip:110262357 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0710 11 14271020 14280732 Amo11g0710 11 14271020 14280732 ECH
Amo05g1015 05 13276622 13279992 Amo11g0710 11 14271020 14280732 PCT