Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0706 ATGGATCGGGCGGCGGTTACCGTCGGACCCGGCATGGACATGCCGATCATGCACGACAGCGACCGTTACGATCTGGTCCGTAACATCGGGTCAGGAAACTTCGGCATCGCAAGATTGATGCAGGATAAGCAGACCAAGGAGCTCGTTGCTGTTAAGTACATCGAACGCGGCGACAAGATTGATGAAAATGTCAAGAGAGAAATCATTAATCACAGGTCTTTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTTATTTTAACACCTACGCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAACTGTTTGAGCGAATCTGCAATGCTGGGCGCTTCTCMGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTTTGTCACCGGGACCTGAAGCTGGAGAACACTTTGCTGGATGGAAGCCCAGCACCACGTTTGAAGATATGCGATTTTGGCTACTCCAAGTCTTCGGTGCTTCATTCACAACCAAAGTCAACAGTTGGTACTCCAGCTTATATAGCTCCAGAAGTATTGCTGAAGCAAGAGTACGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACTTTATATGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTAGTGAACCAAAGGATTTTAGGAAGACAATTCAGAGAATTCTCAGTGTCCAGTATTCCATTCCAGACTTTGTTCAGATATCTCCTGAATGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATCACGATGTCTGAGATCTGGAACCATGAATGGTTTTTGAAGAATCTCCCGGCAGATCTGATGGATGAGAAGATAATGGGCAACCAATTTGAAGAGCCAGACCAACCAATGCAGAGCATTGATACAATCATGCAGATAATCTCAGAAGCTACCATACCAGCAGCGGGGGCCTATTCCTTAGACCAGTTTATGGCAGATAACATTGACATGGATGACGACATAGATGAATTAGAATCCGAATCCGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATAA 1089 0.4536 MDRAAVTVGPGMDMPIMHDSDRYDLVRNIGSGNFGIARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGAYPFEDPSEPKDFRKTIQRILSVQYSIPDFVQISPECRHLISRIFVFDPAERITMSEIWNHEWFLKNLPADLMDEKIMGNQFEEPDQPMQSIDTIMQIISEATIPAAGAYSLDQFMADNIDMDDDIDELESESELDIDSSGEIVYAI* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0706 362 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0706 362 SUPERFAMILY Protein kinase-like (PK-like) 16 314 IPR011009 -
Amo11g0706 362 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 14 356 - -
Amo11g0706 362 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0706 362 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Amo11g0706 362 Coils Coil 327 347 - -
Amo11g0706 362 PANTHER SERINE/THREONINE KINASE 14 356 - -
Amo11g0706 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Amo11g0706 362 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Amo11g0706 362 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo11g0706 362 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0706 Amo-Chr11 14118457 14124107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0706 16 289 CBL-interacting serine-threonine protein kinases AT4G24400 42.756 7.92e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Amo11g0706 Pkinase 3.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0706 K14498 - gmx:100806949 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0706 11 14118457 14124107 Amo11g0706 11 14118457 14124107 ECH
Amo01g0034 01 908621 915540 Amo11g0706 11 14118457 14124107 hybridization
Amo11g0706 11 14118457 14124107 Amo05g1008 05 13156413 13161059 PCT