Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0660 ATGGAAGGTGCAAGACCAACTTTTATGTTTCAAGAACCACCTAATTGCCCTGAAAATAGTGAACAAGTTAAATTGGAAGTTAGTCTACCAAATTGTTCATTTCTCCGGACAGAAGGTCCTCGGATGGAAAGGCTAGCCAAAGGACAGCAGTCTGTTTGTGAACTCCTTACTAATTCAGATTGCCAATGCCGCGGAGCTAGTGACACTCAAGTGGAAGACCGAAAGGAATCCGATAGTTTCTGTGATAGTATTGATGATGAGATAAACGAACCTTGTTTAACCTCTGAGATTTCTGTCTCTGTTATGGATACAAATGCAAGTGAATCGCCAATTAATGGTAAGGAAGAAGATTTCTTATTTTCCGAACCCACTTGGCTCAAGGGAGATGAATCTGTGGCAGTGTGGGTCAAGTGGAGAGGAAAGTGGCAAGCTGGTATCCGATGTGCGAGGGCTGATTGGCCATTATCAACCTTGAGAGCAAAACCAACTCATGACCGGAAGAAATATTTTGTCATGTTTTTCCCGCATACAAAGAATTATTCCTGGGCTGATACGCTGCTTGTTCGATCAATCAATGAGTTTCCCCAGCCTATTGCACATAAAACTCATAAAGCAGGATTGAAAATGGTAAAAGACTTGACTGTTGCTCGAAGATTTATAATGCAAAAGCTAATTATTGACATGCTGAACGTTGTTGATCAGCTTCATCCCAATGCTTTGATAGAAGCTGCTTGTCATTCGATGTTCTGGAAGGAATTTGCTATGGAGGCTTCTTATTGCTCTCTCTATTCTGATTTTGGCGGAATGCTTCCAAAGCTGCAAAATAGCATATTACAACAATACTTAAATGCTGCGTGGATGCAACATTCTTTCCACTCTTGGGTTGGACGATGTCAAAATGCAAAAAGTGCTGAATCAGTAGAGTTGCTGAAGGAGGAGTTGTTTGATTCTATTTTGTGGAGTGATATCAACCCTCAATCGAATGCACTTCTGCAGTCAACATTGGGTTTTGAGTGGAAAACATGGAAGCATGATGTAATGAAATGGTTTTCCCCATTTCATTCTTTATCTGGTAGCAAGAACACAAAGCATCTGACCTCTGACAATCTGTATCAACAGAGCCTTCACATCGGTAGAAAACGGGCCAAACTTGAAGTTCGACGTGCAGAAACACATGCTTCACTAATGGAAACCAAGGGTTCAATTCCTTCAGTTACACTTGAGACTGACCCAGGTGTCTTTAATAACCAGAACACATTGAGTACATTAGCAACTGAGACTTCTAAAAAGGAATGTGCAAGGGAGGTACCTATAGCAACAACCGAATCGCGAAGTAATTTGGCCAATAAATGGAACGAGATCATAGTTGAGGCTGTAGGTTCAGAGATCCTGCATACCAATGGACTGGGATCAACTCCTACAAATGAAATGGCTATTCAAAAATATGTAGAGCCTGTAACTAAGAATCCGCAATGCATAGTTTATATTGAAGCCAAGGGAAGACAGTGTGTGAGATCAGCAATTGATAATGATGTATATTGTTGCGTGCATTCTCGTTTTCTGGGCATCTTAGCAAAAGCTGAAAAACATGTTTCAGTTGATACACCAATGTGTGAAGTTAGAACTGCTGTTGGTACTAGATGTAAGCATCACGCTGTTCCTGCATCTTCATTCTGCAAGAAACACCAACCTCATGATGAGACCGCAAATTTTACACACAATACACGGAAAAGAAATCATGAAAATTATATTGCTTCAGAGGGCATGTTTTGCAAAGACATTGTATTGGCAAATGTCGAAGGTCCATTGGAAGTAGACCCCATATCAACCATTGGTGGTTATTCCTTTCGTGGAGGTTTGTTAAATGAGAATCCCATGCATTCTGACAATAATCATAATGCAATGAAGGCAGTTAACTGTGTAGGCTTTCCTCCCTTTGATGAAAAAGATCCTTGTTCCAAAGCTCCAAAATGGCATTTCTTGTACTGTGAAAAGCACCTTCCAAGTTGGCTTAAACGGGCAAGACATGGAAAGAGTAGGATAATATCAAAAGAAGTGTTTGCAGAGCTCTTGAGGAGTTGCTACTCCTGGGAACAAAACGTACATTTGCATAAAGCTTGTGAGCTTTTTTACAGGCTCTTCAAAAGCATTTTGTCGCAAAAAAGCTCTGCTCCTAAGGAAGTTCAGCTGCAGTGTGCTTTGACCGAAGCCTCTAAAGATGCAAGTGTTGGAAAATTCTTCACAAAGTTGGTTCATAGTGAAAAGGAGAACATCAAGTCGATTTGGGGATTCAAGGATGATGTGGATGTATCCTCACTCATAGAAGATTCATCTCTTTTCCTTACCACAAGTAATGACAGCTCTGGAAATGAAAATGCCATCAAGTGTAAAATATGCAATGCTGAATATCCTGATGACCAAACACTTAGTAACCATTGGATGGAGAATCATAAAAAGGAAGCACAGTGGTTGTTTAGAGGTTATGCTTGTGCCATTTGTTTGGATTCCTTTACTAACAAGAAACTACTGGAAACCCACGTTCAGGAGAGACATCATGTGCAGTTCATTGAGCAGTGCTTGCTTCTCCAATGTATTCCCTGTGGTTTTCATTTTGGTAATATGGAAGAATTATGGCTGCATGTTCTAACTGTTCACCCTGTTGAGTTTAAGTCATCCAAAGCTCCAAGTCAACAGTCTTTCTCTACAGGCGAGCACTCTAGTGAAAAACTTGAATATGGAATTTCAGCTCCCTTGGAGAATATGTCTGAGAATCCAGGTGGTTTTCGGAAGTTTACTTGCAGGTTTTGTGGGTTGAAATTTGATCTTCTACCTGACCTTGGTCGCCATCATCAAGCTGCTCATATGGGTCACAGTGCAGCAAGTGGCCGCCCTCCAAAGAGGGGAGCTCGTTATCATGAGTATAGATTGAAATCTGGAATACTTAGCCGTCCTAAATTTCGAAAGAGTTTGGCGGCAGCATCATATATGATCAGAAGTAAGGCAACTGCTAATTTAACGAGACGCATTGAGGCGACAAAGTCACTTGGCATGGAGGAAATAACAATACAACCTCATTTAACTGAGACAGATAATTTTGGTAGATTGGCAGAACATCAATGTTCCACAGTTGCAAAGATTTTATTTTCCGAGAGTCGGATGACTAAACCTCGGCCTAACAATCTTGATATTTTATCAATTGCTCGCTCTGCTTGCTGCAAAGACAGTCTTAAGGCCTCACTAGAGGAGAAATATGGAATTTTGCATGAAAGGATCTATTTGAAGGCAGCAAAACTTTGCAGTGACTATGACATTGTAGTGAACTGGCACCAGGATGGGTTTATTTGTCCTAGAGGCTGTAAGGTATCAAAGGATCAAGTGTCACTTTCTCCCTTAGCATCTCTTTCTAATAGGTTTGTAAGGAAAAACTCTATAATTTTGTCAGATCCTGAAAGTGATGAGTTCGAGGTGGATGAGTATCACTACATCATCAATTCAAACCATTTAAAGTTAGGATCCCTGCAAAAGGCTGTTGTCTTATGCAATGACATAAGCTTTGGGAAAGAATCGATTCCGATGATCTGTGTAGTTGACCAAAATCTTCTAAATTCACTTCGAAATGGATCCAACGAGCAAGATCAGCCTTGGGAGAGCTTTACCTATATTTCAAAGCCAATTCTTGATCGATCCCTTTCTCTTGATTCTGAGAGTCTGCAACTAGGATGCTCTTGTTCATATCCCACCTGCTTTCCTGAATCTTGTGATCACGTCTACCTTTTTAATAATGACTATGATAATGCAAAAGACATTTCAGGGAAACCAATGCGTGGCAGGTTCCCATACGATGAGAATGGTCGAATCATATTAGAGGAAGGTTACCTTGTATATGAGTGTAATCAAATGTGCAGATGCAAAAGATCATGTCCAAATAGAATACTGCAGAACGGAGTACGGGTTAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGGGCTGGTGAGGCTATCTTGCGTGGCACATTTGTGTGTGAGTATATTGGAGAGGTTATAGATGAGTGTGAGGCACAAAACAGACGCAAGAGATACGGCAAAGAGCATTGTAGTTATTTTTTTAATGTTGATGCTCGTGTCAATGACATGAGTAGATTGATTGAAGGACAAGCCAGATATGTTATTGATGCTACTAGATATGGAAATTTATCCAGGTTCATCAATAACAGTTGCTCACCCAATCTTGTGAATTACCAAGTTCTTGTAGAGAGCATGGATTGTGAGCGCGCACATATTGGTCTTTATGCGAGTCGAGATATTGCTTTGGGTGAAGAACTAACATATAATTATAATTATGAGCTAGTGCCTGGAGAAGGGTGTCCTTGCCTTTGTGGTTCTTTGATGTGCCGAGGACGGCTTTACTAG 4422 0.4062 MEGARPTFMFQEPPNCPENSEQVKLEVSLPNCSFLRTEGPRMERLAKGQQSVCELLTNSDCQCRGASDTQVEDRKESDSFCDSIDDEINEPCLTSEISVSVMDTNASESPINGKEEDFLFSEPTWLKGDESVAVWVKWRGKWQAGIRCARADWPLSTLRAKPTHDRKKYFVMFFPHTKNYSWADTLLVRSINEFPQPIAHKTHKAGLKMVKDLTVARRFIMQKLIIDMLNVVDQLHPNALIEAACHSMFWKEFAMEASYCSLYSDFGGMLPKLQNSILQQYLNAAWMQHSFHSWVGRCQNAKSAESVELLKEELFDSILWSDINPQSNALLQSTLGFEWKTWKHDVMKWFSPFHSLSGSKNTKHLTSDNLYQQSLHIGRKRAKLEVRRAETHASLMETKGSIPSVTLETDPGVFNNQNTLSTLATETSKKECAREVPIATTESRSNLANKWNEIIVEAVGSEILHTNGLGSTPTNEMAIQKYVEPVTKNPQCIVYIEAKGRQCVRSAIDNDVYCCVHSRFLGILAKAEKHVSVDTPMCEVRTAVGTRCKHHAVPASSFCKKHQPHDETANFTHNTRKRNHENYIASEGMFCKDIVLANVEGPLEVDPISTIGGYSFRGGLLNENPMHSDNNHNAMKAVNCVGFPPFDEKDPCSKAPKWHFLYCEKHLPSWLKRARHGKSRIISKEVFAELLRSCYSWEQNVHLHKACELFYRLFKSILSQKSSAPKEVQLQCALTEASKDASVGKFFTKLVHSEKENIKSIWGFKDDVDVSSLIEDSSLFLTTSNDSSGNENAIKCKICNAEYPDDQTLSNHWMENHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHHVQFIEQCLLLQCIPCGFHFGNMEELWLHVLTVHPVEFKSSKAPSQQSFSTGEHSSEKLEYGISAPLENMSENPGGFRKFTCRFCGLKFDLLPDLGRHHQAAHMGHSAASGRPPKRGARYHEYRLKSGILSRPKFRKSLAAASYMIRSKATANLTRRIEATKSLGMEEITIQPHLTETDNFGRLAEHQCSTVAKILFSESRMTKPRPNNLDILSIARSACCKDSLKASLEEKYGILHERIYLKAAKLCSDYDIVVNWHQDGFICPRGCKVSKDQVSLSPLASLSNRFVRKNSIILSDPESDEFEVDEYHYIINSNHLKLGSLQKAVVLCNDISFGKESIPMICVVDQNLLNSLRNGSNEQDQPWESFTYISKPILDRSLSLDSESLQLGCSCSYPTCFPESCDHVYLFNNDYDNAKDISGKPMRGRFPYDENGRIILEEGYLVYECNQMCRCKRSCPNRILQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVIDECEAQNRRKRYGKEHCSYFFNVDARVNDMSRLIEGQARYVIDATRYGNLSRFINNSCSPNLVNYQVLVESMDCERAHIGLYASRDIALGEELTYNYNYELVPGEGCPCLCGSLMCRGRLY* 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0660 1473 ProSiteProfiles Zinc finger C2H2 type domain profile. 828 851 IPR013087 -
Amo11g0660 1473 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 45 1473 - -
Amo11g0660 1473 SMART c2h2final6 862 885 IPR013087 -
Amo11g0660 1473 SMART c2h2final6 794 817 IPR013087 -
Amo11g0660 1473 SMART c2h2final6 931 954 IPR013087 -
Amo11g0660 1473 SMART c2h2final6 828 851 IPR013087 -
Amo11g0660 1473 ProSitePatterns Zinc finger C2H2 type domain signature. 933 954 IPR013087 -
Amo11g0660 1473 ProSiteProfiles Post-SET domain profile. 1457 1473 IPR003616 -
Amo11g0660 1473 SMART preset_2 1180 1302 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo11g0660 1473 SMART set_7 1318 1456 IPR001214 GO:0005515
Amo11g0660 1473 ProSiteProfiles SET domain profile. 1318 1450 IPR001214 GO:0005515
Amo11g0660 1473 SUPERFAMILY SET domain 1172 1463 IPR046341 -
Amo11g0660 1473 Pfam SET domain 1329 1450 IPR001214 GO:0005515
Amo11g0660 1473 ProSitePatterns Zinc finger C2H2 type domain signature. 864 885 IPR013087 -
Amo11g0660 1473 Gene3D SET domain 1161 1454 IPR046341 -
Amo11g0660 1473 ProSiteProfiles Pre-SET domain profile. 1239 1315 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo11g0660 1473 Pfam Pre-SET motif 1184 1310 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo11g0660 1473 ProSitePatterns Zinc finger C2H2 type domain signature. 796 817 IPR013087 -
Amo11g0660 1473 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 45 1473 - -
Amo11g0660 1473 Gene3D Classic Zinc Finger 776 854 - -
Amo11g0660 1473 Pfam Zinc finger C2H2-type, 3 repeats 830 955 IPR040689 -
Amo11g0660 1473 ProSiteProfiles Zinc finger C2H2 type domain profile. 931 959 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0660 Amo-Chr11 12503392 12512567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0660 121 1472 C2H2 Transcription Factor Family AT2G23740 49.964 0.0 1273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo11g0660 Pre-SET 8.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0660 - - ahf:112789085 2952.54