Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0625 ATGGATCTAGTTTTCTCACCTGGTTATGGATTAGATAGCAGTGGCACTCAGCAAAGTGCTTGCTCTTTTGATATTCTTACAAGTTCGGGAAATTCAATACAAATGCTTGAAGGGTCTAAGGTAAATGATGTTCACCAGGCTAACGTTGGAAATTCTCAAAGGGTTGATGAAGATAATGGGATTGAGGGAGATGTACTATTGGAAATGTCACAGGAAAAGAATGCATCTGAATTAAGCCATGCCCTGGTTCATTTTCATGACTCTGAGGCTATTCAACAGTCTAATTATAGTGATGGAGAGGGCAGAAAAATCTCAACAGCTTCTGTATCTGAGACAGATAAGACATGCTCTGCCACCAGTGTTATTCTTAAGAAGAAAATGAGGAGGAGGTGCAAAAGGGTATCTCAGATCAAACTGAGTATGTTATACCGTAGTGACATGGTGGGCTCAACTGTTACTGAGCAGATGCAATCACTGAATGGTGGTCCAAGTGGAACTCAGTTTGGGTTGGAAGAGGCTCACGATAATCTAGTAGACGATTCAGGAACAAAAAGAAGCTGCAGGAAGTTATCATCTGTCGGTGCATCCCAGCATATTAGGAAACCAAACTACTCCATAAATGGAATGAATAAGTCCAGTAGATGCCGGATTAAAGATGATGATCTGTTGGTCTCAGCAATATTCAAGAACAAGGATTCTGGCCAAAATATGATTCGTGGTAATTCTAAAGCAAAATCTGGCAAATTGAGAGGCCGGAGAAATCTTAAAAGCCAAAAGGGCAGATGTCGGTTGCTACCAAGGAATCTTTGCAATGCAGGGAATCACAATAAGGATGGCAAGAGGTATTATTTGGGGTCAAGGACAGTCTTGTCCTGGTTGATTGAGAATGGTGTGATATCTATAAATGATGTGATTCAATACCGAAGCCCTAAAGATGATGTTGTCATTAAGGATGGTAGGATTACCAAGGATGGTGTTGTGTGCAAGTGTTGTTCTAATGTGTTTACATTATCAGAGTTCAAATTTCATGCTGGTTTTGCACTGAATCGTCCCTGCTTGAATCTTTTCATGGAGTCTGGTGAGCCGTTTACACTGTGCCTCCTTCAAGCTTGGTCTTCTGAGTACAAAGCCAGGAAAAGTCAGAATCAGGCTGTGAAAGTTGATAATGATGATAGAAATGATGACTCATGCGGCCTATGTGGGGAGGGGGGTGAGCTGATTTGTTGTGATAACTGTCCGTCTACTTTTCATCTGACTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCACAAATTGCACTTGTCGGATATGTGGAAAATTGGTCATGGACAAGGAGGCTTCAGATGGGTATGATTCATTGCAATGTTCACAATGTGAACATAAATATCATGATAAATGCCTGAAAGAAAGAGATAAACAAGAAGGCTTTCTTCCAGATACTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTATACTCTGGTCTCCAATCTCAAGTGGGGTTAGTTAATCATGTTTCCAATGGCTTCTCATGGATGCTTCTTAGATGCATCCATGATGACCAAAAGGTTCATTCTACCCAGTGGTTAGCCCTGAAGGCGGTGTGCAATACTAAGTTAGCTGTTGCGCTTACTATCATGGAGGAGTGTTTTTTGTCGATGTTGGATCCAAGAACAGGCATACACATGATACCCCAACTATTATACAACTGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAAAAGCAGGATGTGTTAACATCTGTAGCATGTATTAGGGTGCATGGAACTACAGTTGCTGAGATGCCTCTCATTGCAACTTGCAGTCGGTTTCGTCGGCAAGGAATGTGCCGACTCCTTGTGAGTTCAATTGAAGAGATGCTAACATCTGTCAAGGTAGAGAAGCTTGTGGTAGCAGCAATTCCAGATTTGGTTGAGACATGGACCAAAGGATTTGGATTCACACCTGTGGATGCCGCCGAAAAGCAGAAGTTCAACAAAATCAACTTCATGGTTTTTCCTGGAACAGTGTTACTTGAAAAACCCTTGTACAAGAAGGAAAGACCCGAAGGAATCTGTTATGCATCACTGATGGCAGCAAATGAACCAACCAAAGTAGGTATCAGTTCCGAAGAAATGGCCCTGGATAAATCAGCACTAGAAGATGTTGGAGACATTGCTACTGACGACGTGGGTGCTGATAAGTCAGGGAAACCAGCAGAACTTGAAGGTAAGAATCACAGAGACACCATTGCTGACAGGGAAACCAGCAGAGATGATAACACTCAAGCCATCAACAACGACGACACTGGATTAGACGCCACAAAATCAACAGAAATTAGTAGCTGTTTTGGAGCAGAGATCATCCCGGTAATGGTCTCGGACAAGTCTGATAAATTGTGCGGTGGAGACAGCATGCTCGAACTGAGAATGAGCAGCGAAATCCAAACGGCGTGTAAGTTGGGACAGCAATCAAGTGAGGACTGTAATGTAAAGAAAGATGGTGCTGAATCAGGTGTATTAGTTATTGAGGAAAAGGATGTCAAAGTAGGTGAAGTTCAGGAAAATGCAAATGTGCAGGGTAATTTTTCAAATTTGTCCTGTAAAACATTCGTGGGCAGCAATTTTGACATTGATTCTAGTATTGAACGATCAGGTGAAACTGCTCTTTTTGGAACATTTGCAAAGTCTGCAAGTTGA 2730 0.4227 MDLVFSPGYGLDSSGTQQSACSFDILTSSGNSIQMLEGSKVNDVHQANVGNSQRVDEDNGIEGDVLLEMSQEKNASELSHALVHFHDSEAIQQSNYSDGEGRKISTASVSETDKTCSATSVILKKKMRRRCKRVSQIKLSMLYRSDMVGSTVTEQMQSLNGGPSGTQFGLEEAHDNLVDDSGTKRSCRKLSSVGASQHIRKPNYSINGMNKSSRCRIKDDDLLVSAIFKNKDSGQNMIRGNSKAKSGKLRGRRNLKSQKGRCRLLPRNLCNAGNHNKDGKRYYLGSRTVLSWLIENGVISINDVIQYRSPKDDVVIKDGRITKDGVVCKCCSNVFTLSEFKFHAGFALNRPCLNLFMESGEPFTLCLLQAWSSEYKARKSQNQAVKVDNDDRNDDSCGLCGEGGELICCDNCPSTFHLTCLSTQEIPDGNWYCTNCTCRICGKLVMDKEASDGYDSLQCSQCEHKYHDKCLKERDKQEGFLPDTWFCGQSCQEVYSGLQSQVGLVNHVSNGFSWMLLRCIHDDQKVHSTQWLALKAVCNTKLAVALTIMEECFLSMLDPRTGIHMIPQLLYNWGSDFARLNFQGFYTVVLEKQDVLTSVACIRVHGTTVAEMPLIATCSRFRRQGMCRLLVSSIEEMLTSVKVEKLVVAAIPDLVETWTKGFGFTPVDAAEKQKFNKINFMVFPGTVLLEKPLYKKERPEGICYASLMAANEPTKVGISSEEMALDKSALEDVGDIATDDVGADKSGKPAELEGKNHRDTIADRETSRDDNTQAINNDDTGLDATKSTEISSCFGAEIIPVMVSDKSDKLCGGDSMLELRMSSEIQTACKLGQQSSEDCNVKKDGAESGVLVIEEKDVKVGEVQENANVQGNFSNLSCKTFVGSNFDIDSSIERSGETALFGTFAKSAS* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0625 909 MobiDBLite consensus disorder prediction 738 783 - -
Amo11g0625 909 CDD PHD2_CHD_II 396 436 - -
Amo11g0625 909 Pfam Tify domain binding domain 319 369 IPR032308 -
Amo11g0625 909 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 438 IPR013083 -
Amo11g0625 909 PANTHER INCREASED DNA METHYLATION 1 29 906 - -
Amo11g0625 909 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 532 694 IPR000182 GO:0016407
Amo11g0625 909 ProSiteProfiles Zinc finger PHD-type profile. 394 439 IPR019787 -
Amo11g0625 909 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 495 IPR013083 -
Amo11g0625 909 MobiDBLite consensus disorder prediction 738 772 - -
Amo11g0625 909 Pfam PHD-finger 397 438 IPR019787 -
Amo11g0625 909 PANTHER PHD FINGER PROTEIN 12 29 906 IPR042163 GO:0003714|GO:0045892
Amo11g0625 909 SMART PHD_3 396 437 IPR001965 -
Amo11g0625 909 SMART PHD_3 438 492 IPR001965 -
Amo11g0625 909 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 544 668 IPR016181 -
Amo11g0625 909 SUPERFAMILY FYVE/PHD zinc finger 383 438 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0625 Amo-Chr11 11584147 11590065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0625 101 780 PHD Transcription Factor Family AT3G14980 47.135 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo11g0625 TDBD 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0625 - - adu:107459718 1818.9