Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0615 ATGGAGTCAGATCTTCACCGGCACCCTCCCATGTTCCTGGAYCACCACCACCACCACCACCACCACCACCATCACCAGCAGATGAACACCACCACCACCAACAAYAACARCAATTCTTCGGGKCTAACGAGGTTCCGATCGGCACCAAGTTCGTATTTTTCYAGCATCATTGACAAGGAATTCTACGAAAGCATCTTCAACAAACCTTCAAGCCCAGAAACTGAGAAAATCCTCGCACGCTTCATGAATAGCCTTGCAAATGATGAACCTGAAGATGATTCATTACTTGGAGTAGCAGCTGCTACTTCTCCTACTACTAATAATAATAAAAATCTGTCACCGTCACCACAACCGCCACAACAAGTAGTTCAGCAAATCTCTCAAGTGAAGGAAGAAGAGATTAGTATTAATACCATTAATACCAATAATACCCTTCAGCCTCAGCCTTTGCCTTCTTCAATGAATAATGAATCATTGGTGCAGCAACCACAGCAGCAGATGAATAGTATGAGTAACAATAATTATGGATCTTTGAGTGGTAATAATCCTCCAACTCAGAGTTTTTATCAAAGTTCAGGAAGACCACCTTTGCCGAATCAGATGAAAACTGGTCGTGGAAATGCTTCTAATCTTATTAGGCATGGTAGTTCACCTGCTGGATTCTTTTCAAACCTGAACATTGAAGGCTATGCTGCTTTAAGAGGCATGGGAACTATGGGAGCTGCTGCTAGCAACACTAGTGAGGATGCAAATTTTTCTCCGGTGGCGAGGTTGAAGAATCCACCAACCTTTTCATCCTCTGGACTAATGACTCCAATAGCTGAAATCAGGAGCACATCCAATACAATAAACAATCCAGAGAGTGCTGAAGCCTTTGCAGAAAGCCAGAGCAGCGATTTTATGTCAGGTTTAACCGTTGGTTCTTGGGACGATTCTTCTTCTTCGATGATGTCCGACAACATTGCTGGTCGGAAAAGGTTCAGAGACGAAGATGTGAAACCATTTGCCGGGGCGAATGTGGCCGACACTCAGGTTAAGACCGAAGCAGGCCAGGCTCCTGGTGCTCCATTGGCTCACCAGTTGAGTATGCCAAACACATCATCGGAAATAGCAGCCATTGAGAAGTTTCTCCAGTGCTCGGATTCTGTCGTGTGCAAGATTCGTGCCAAGCGGGGCTGTGCTACTCATCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTACAGGATCTCGTCCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGATTACATCAAAGAACTTCAAAACCAAGTTGAGACTCTTTCGGACAGTCAAGCCAAGTGTACGTGTGCACACAAGAAGCAGCAATAA 1398 0.4456 MESDLHRHPPMFLDHHHHHHHHHHHQQMNTTTTNNNXNSSGLTRFRSAPSSYFSSIIDKEFYESIFNKPSSPETEKILARFMNSLANDEPEDDSLLGVAAATSPTTNNNKNLSPSPQPPQQVVQQISQVKEEEISINTINTNNTLQPQPLPSSMNNESLVQQPQQQMNSMSNNNYGSLSGNNPPTQSFYQSSGRPPLPNQMKTGRGNASNLIRHGSSPAGFFSNLNIEGYAALRGMGTMGAAASNTSEDANFSPVARLKNPPTFSSSGLMTPIAEIRSTSNTINNPESAEAFAESQSSDFMSGLTVGSWDDSSSSMMSDNIAGRKRFRDEDVKPFAGANVADTQVKTEAGQAPGAPLAHQLSMPNTSSEIAAIEKFLQCSDSVVCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKELQNQVETLSDSQAKCTCAHKKQQ* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0615 465 Gene3D - 394 465 IPR036638 GO:0046983
Amo11g0615 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 393 443 IPR011598 GO:0046983
Amo11g0615 465 Pfam Helix-loop-helix DNA-binding domain 398 444 IPR011598 GO:0046983
Amo11g0615 465 MobiDBLite consensus disorder prediction 133 212 - -
Amo11g0615 465 SMART finulus 399 449 IPR011598 GO:0046983
Amo11g0615 465 MobiDBLite consensus disorder prediction 1 45 - -
Amo11g0615 465 MobiDBLite consensus disorder prediction 12 27 - -
Amo11g0615 465 MobiDBLite consensus disorder prediction 87 121 - -
Amo11g0615 465 MobiDBLite consensus disorder prediction 28 45 - -
Amo11g0615 465 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 37 462 - -
Amo11g0615 465 MobiDBLite consensus disorder prediction 99 121 - -
Amo11g0615 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 462 - -
Amo11g0615 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 396 455 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0615 Amo-Chr11 11377192 11380660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0615 12 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 36.123 1.57e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo11g0615 HLH 6.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0615 - - adu:107476789 777.319