Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0608 ATGGCGGGGTTGTTCTCGTTAGGAGGCGGTGGTGGTGGAGGAGGAGGAAGAGGTAGCAGCGGAAACCACCAGGACCAGGAACAGCAACACCAGCACCACAGTCAAAACACCGAAATTCCTCCTCCAGAGACCTTATTTTGGTACAAACAAAACGACGACGTTTCAACATACCGCGGTTTCGAGCTATGGAACCAGCATCAGCTTCAGCAGCAACAGCAGCAACATCACGTGATAGCACATCACCATCAAGCCCGCCCTCTCTTCCACCGAGATCTCTACTCGTCGGCTGTTGCCCTTGGCGTGGGGCCCAGCGGCGCGTCCGATGAGCAGTCTCCGTCGAGATCGGCGGTTATGGCGATGCGGTCCGCSGSGGTGGGAGAAGCCGGAGGAGCAGGAAGCGGAACAACCGGAATAAGCTGTCAAGATTGCGGAAACCAGGCGAAGAAAGACTGCCCTCACATGAGGTGCAGGACTTGTTGCAAGAGTCGTGGGTACGACTGCCAGACCCACGTGAAGAGCACGTGGGTCCCAGCCGCTAAGCGCCGCGAGCGGCAACAGCAGTTAGCGGCGCTTCAGGATCACCAGAACAGAGATGCTTCAAAGAGACCTAGAGATGGCGGTAATAGCAACAACCCTTCCACTTCTTCAGCACTTGTTTGCACTACTCGTTTGCCCTCCACTGGGTTAGAGCTTGAGCAAGGAAATTTTCCATCAATAGTGAACTCTCCTGCAGAGTTCAGGTGCGTGAGGGTTAGTCCCTTGGATGATGTGAARGAACAGTACGCTTATCAAACCGCCGTCAACATCGGAGGCCATTTGTTCAAAGGGATTCTCTATGACTACGGTCCGGACAGCGAAAATGCTAGCTACTACGGTGGTGGCAGCGGAGGCGGCGAGGGTTCTTCTTCCGCTATTGCTGGAGCTCAGCCCTTGAACCTCATCACCGGCACTGATTCTGCCACCACCGCAACCGCAACCGCCCCGGGTGTGTCGTCTGCAGAGGCTCTTGATGTTGATCCTTCGTCGTTGTACAATCCAGCTCCAATTAATACATACATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCATCCAAGATCTTGA 1107 0.5456 MAGLFSLGGGGGGGGGRGSSGNHQDQEQQHQHHSQNTEIPPPETLFWYKQNDDVSTYRGFELWNQHQLQQQQQQHHVIAHHHQARPLFHRDLYSSAVALGVGPSGASDEQSPSRSAVMAMRSAXVGEAGGAGSGTTGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQLAALQDHQNRDASKRPRDGGNSNNPSTSSALVCTTRLPSTGLELEQGNFPSIVNSPAEFRCVRVSPLDDVKEQYAYQTAVNIGGHLFKGILYDYGPDSENASYYGGGSGGGEGSSSAIAGAQPLNLITGTDSATTATATAPGVSSAEALDVDPSSLYNPAPINTYMAGSSGTQFFPHHPRS* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0608 368 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 365 IPR007818 GO:0003700|GO:0006355
Amo11g0608 368 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 236 283 IPR006511 -
Amo11g0608 368 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 139 181 IPR006510 -
Amo11g0608 368 Pfam Domain of unknown function (DUF702) 137 284 - -
Amo11g0608 368 MobiDBLite consensus disorder prediction 178 219 - -
Amo11g0608 368 PANTHER PROTEIN SHORT INTERNODES 1 365 - -
Amo11g0608 368 MobiDBLite consensus disorder prediction 205 219 - -
Amo11g0608 368 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0608 Amo-Chr11 11148603 11150762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0608 1 368 C2H2 Transcription Factor Family AT3G51060 48.635 2.96e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo11g0608 DUF702 3.9e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0608 - - ahf:112720334 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0126 01 2434103 2436370 Amo11g0608 11 11148603 11150762 hybridization