Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0605 AATCTGTCGGTAACTGGTAAAAATTCGTCGGTAAATAATTTTCGACGGAACTTTTACAGAAGGACAAAATCCGTCGATAATTTCGTCGGTAACCAAAAATCCGTCTGTAAATCTATCTGTATTAATTCATTTTATAAACCTATTGGTCATTTCATTTTCAGAATGGGCAACTTGGTCATTGCGTACATTATTTTAGCCTTTTATTCTCTCTTCATTATTGTGCATGGCACTGATAAGTTATCATGCAATCAAACTCCATATCCCACTCTTTGTAACCATTACATTGGCACTACCAATTATTCAATTTCATCATCATCAAGTGATGTTTCCTCTTCTTATTATTCCTTCCATGACATGGCCCTTAAGGTCACCATGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACGATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATCTATCAGCTCAACCGTTCAATGAACTCAAACAATCTAAACGACAGGTTAACATGGCAAAGTGCTTCTATTGCGAATCAACAAACATGCCAAAACGGTTTTCTTGATTCTAACCTTTCATCTCACTACCTAAACTACTTTCCATCCATTTCAAGCAACTTATCCAAGTTGCTGAGCAACTCTTTGGCCATTAGCAATACATTAACGTCCTTGACTTCGTTACCAAAAGACCCGGTTGTTCGCCGCGGTCGAAAATTGCTTTCTTTTAATGGCTTCCCAGAGTGGCTATCTCCTTCCGACAGGAGGCTTCTTCAGGCTTTGCCGGGAACGGCGGCACCGAAGGCGGACATTGTGGTGGCACAGGACGGGAGTGGGAATTACAAGAGTGTTTCGGAGGGCGTGGCGGCGGCCGGTAGGCTGAATAAGAATGGTCGAGTTTTTACTAAATTTTATCAAAGTGATGGGTTCATCGCCAGGGACTTAACAATTGAGAACAGTGCTGGGCCACAGAAGCACCAAGCGGTGGCACTTCTTTCCAGCTCCGATCACTCCGTGTTCTACCGGTGTAGCTTCAGAGGCTACCAAGACACCTTATACGTCCTTTCCCAACGCCAATTCTACCGCGACTGCGACATCTACGGCACCATAGACTTCATCTTCGGTGACGCTGTCGCCCTCTTCCAAAACTGCAACATCTTCTTGAGAAAACCAATGAGTAAGCAACAGAACGCAGTGACAGCACAAGGGAGAACCGATCCCAACGAGAACACCGGCATTGTCATCCACAACTGCCGCATCATGGCGGCTTCAGATCTGAAGCCAGTTCAGGGATCTGTCAAGTGCTTCCTTGGCCGGCCGTGGCAGAAGTACTCAAGAACGGTGGTGGTCAAGAGTAGCCTGGACGGTTTGATTCAACCGGCAGGGTGGATGCCATGGGCGGGAAGCTTTGCTTTGAATACATTGTATTATGGAGAGTATATGAATATTGGAGCAGGTGCTAACACTGCAGGGAGGGTTAAATGGCCTGGCTTTCATGTTATTACCAACCCTACTGAGGCTTTGAAATTTACTGTTGCTAATTTCTTGGATGGTGGATCGTGGATTCCTGGGACTGGTGTTCCGTTTGAAACTGGCCTTTGA 1629 0.4512 NLSVTGKNSSVNNFRRNFYRRTKSVDNFVGNQKSVCKSICINSFYKPIGHFIFRMGNLVIAYIILAFYSLFIIVHGTDKLSCNQTPYPTLCNHYIGTTNYSISSSSSDVSSSYYSFHDMALKVTMDQAIVAHKLVSSTMESNDFKDKRAKSAWEDCLELYENTIYQLNRSMNSNNLNDRLTWQSASIANQQTCQNGFLDSNLSSHYLNYFPSISSNLSKLLSNSLAISNTLTSLTSLPKDPVVRRGRKLLSFNGFPEWLSPSDRRLLQALPGTAAPKADIVVAQDGSGNYKSVSEGVAAAGRLNKNGRVFTKFYQSDGFIARDLTIENSAGPQKHQAVALLSSSDHSVFYRCSFRGYQDTLYVLSQRQFYRDCDIYGTIDFIFGDAVALFQNCNIFLRKPMSKQQNAVTAQGRTDPNENTGIVIHNCRIMAASDLKPVQGSVKCFLGRPWQKYSRTVVVKSSLDGLIQPAGWMPWAGSFALNTLYYGEYMNIGAGANTAGRVKWPGFHVITNPTEALKFTVANFLDGGSWIPGTGVPFETGL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0605 542 SUPERFAMILY Pectin lyase-like 273 540 IPR011050 -
Amo11g0605 542 Pfam Plant invertase/pectin methylesterase inhibitor 81 227 IPR006501 GO:0004857
Amo11g0605 542 PANTHER PECTINESTERASE 73 310 - -
Amo11g0605 542 PANTHER PECTINESTERASE 315 541 - -
Amo11g0605 542 TIGRFAM PME_inhib: pectinesterase inhibitor domain 81 232 IPR006501 GO:0004857
Amo11g0605 542 ProSitePatterns Pectinesterase signature 2. 375 384 IPR033131 -
Amo11g0605 542 CDD PMEI-like_3 80 233 - -
Amo11g0605 542 SMART PMEI_2 73 227 IPR006501 GO:0004857
Amo11g0605 542 Pfam Pectinesterase 315 527 IPR000070 GO:0030599|GO:0042545
Amo11g0605 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 232 IPR035513 -
Amo11g0605 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 232 IPR035513 -
Amo11g0605 542 Gene3D - 302 542 IPR012334 -
Amo11g0605 542 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 73 310 - -
Amo11g0605 542 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 315 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0605 Amo-Chr11 11060880 11065478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0605 81 542 Carbohydrate Esterase AT1G23200 46.816 3.79e-152 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0605 - - aip:107646806 944.11