Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0597 ATGGAAGAAAGTTCTGAAGGAACAGAGACCAGCAAAATCCGTAACATATGCATCCTTGCCCACGTGGACCACGGCAAGACCACCCTCGCCGACCACCTCATCGCTGCTGCAGGTGGCGCCCTCCTCCATCCAAAACTCGCCGGAAGAGTCCGCTTCATGGACTACCTCGACGAGGAGCAGCGCCGCGCCATCACCATGAAGTCCTCCTCAATCTGCCTCCGTTACGGCGACCACTCCATCAACCTCATCGACTCCCCCGGCCACATGGACTTCTGCAGCGAGGTTTCCACCGCCGCGCGCCTCAGCGACGGCGCACTCCTCCTCGTCGACGCCGTCGAAGGCGTCCACATCCAAACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCTCCCCTTGCCTCGTCCTCAACAAGATCGACCGCCTCATCACGGAGCTTAAACTCACGCCGTCCGAGGCTTACGTCCGCTTATTGCGCATCGTTCAAGAAGTTAACGGCATCGTTAGCGCATTCCGTTCCGAGAAGTACCTATCTGACGTGGATTCCCTTCTTGCCACGTCAGGTATGAACCCTAACGAGATTGAGAATGAGGAAGCAGATGATGAAGCTGACGAGTTTCAACCGCAGAAAGGGAATGTGATATTCGCTTGCGCTTTAGACGGTTGGGGATTTGGAATCAATAAATTCGCTGAGATTTATGCTTCCAAGCTTGGTGCTAGTACGAAGATGATTGCTAAGAAGAAAGTTGGTGGTGGTGGAGACAGTGGTAAGGGTAATGCGAAACCGATGTTTGTTCAGTTTGTGTTGGAACCACTGTGGCAGGTTTATGAGGGTGCGCTTAAGGGTGGTGATGAGGGTAAGGGTGTGGTTGAGAAGGTTGTTAGGTCCTTTAATTTGTCGGTGCCGGCGAGGGAGCTTCAGAATAAGGATCCCAAGGCTGTGCTTCAGGCGGTTATCAGCAGGTGGCTGCCGCTCGCGGATGCTGTGTTGTCGATGGTGGTTAGGTGTATGCCYGACCCTGCTGCAGCACAGACATACCGGATATCGCGATTGATGCCGAAGGTTGAGGTGGSTAYTGAGGTTGGAGTTGATAGGAGTGTTTTGGAGGAAACAGAGCGTGTGAGGAAGTCTGTGGAGGTTTGTGATTTGAGGGAGGATGCTCCTTGTGTTGCTTTTGTGTCCAAGATGTTTGCGGTGCCGGTTAAAATGCTTCCTCCCCTGAGAGGGGAGAATGGGAATAGTTATGGCGGCGAAGGAGAAAGCGAGTCGGACGAGTGTTTCTTGGCATTTGCTAGGATATTTAGTGGGGTTTTGCATGCTGGTCAGAGAGTTTTCYTTCTCTCTGCTTTGTATGATCCATTGAAAAGGGAATCAATGCAGAAACATGTGCAGGAAGCTGAATTGCAGACCTTGTATTTGATGATGGGCCAGGGATTGAAAGTAGTGACATCTGCCAAAGCAGGAAATGTTGTTGCCATTCGGGGCCTCGGCCAGCATATCCTGAAATCKGCTACTCTCAGTTCTAGCATGAATTGTTGGCCGTTTTCAAGTCTCGCATTCCAAGTTGCCCCGACCCTGAGAGTTGCAATTGAGCCGTCTGATCCAGCGGATGTGGGTGCACTGCTGAAAGGATTGAGGCTTTTGAATCGAGCAGATCCGTTTGTCGAGGTTACTGTTTCTGCAAGAGGAGAACATGTGCTCTCTGCCGCCGGGGAAGTTCACCTGGAGAGATGCATAAAGGATTTGAAGGAGAGGTTTGCAAAAGTAAGTTTGGAAGTATCACCGCCTCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGCATCCAAGATGCTGGAAAGTTTAAAAGCTTTTACTAAGAGCACAGATTATGTTGAGAAAACAACACCAAATGGTAGATGTGTTGTCCGTGTGCGTGTGATAAAACTTTTGCCTTCTCTTACAAAGGTGCTTGATGAAAGTCCTGATTTAGTTGGTGATGTTATTGGAATTAAGTCAGCGCAGACGATAAAAACATTGGATTGCCAGAGACCAAATGTTACTGAGAATGATAATCTGGCTGAGGTTCTAAGAAAACGCATTGTAGATGCAGTGGAGAGTGATGTGTTGAGCTGGAATGAGATTGATAATGATCATGCTGAGAGATGTAAATTGGAGTGGCTAAAACTTTTGAGGAGGATATGGGCTCTAGGACCTAGACAGATTGGTCCGAACATTCTCTTAACTCCTAATATTAAAGCAGAGGGTACCGATAACTCTGTTCTAGTACGGGGTTGTTCTCATGTGTCTGATAAGTTGGGCTTTGTGCCCGATTCTAGTGATGGAAATTCAGTTGCTGAGACATCTTCAAATGCAAGTCAAGCTTTGTACAAAGAAGCCGAGCGCCTTGAGAGTAGTGTTGTATCCGGATTCGAACTGGCCACTGCCGCTGGACCCTTATGTGATGAACCTATGTGGGGTTTGGCATTTCTTGTTGAGGCGTGGATATCTCCGCTTATTGAACAGAAGGATGAATCTGAAACACATCTACAATCAGAACAGTATGGGATCTTTGCAGGGCAGGTAATTGCCACTGTCAAGGATGCATGTAGAGCAGCCGTGCTTCAGAATAAACCCCGGCTTGTGGAAGCAATGTACTTCTGTGAATTGAATACACCTACTGAATGTTTGGGTCCAATGTATGCTGTACTTAACCGAAGACGGGCCCGAGTTCTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACTGTGCATGCATATGTTCCAGTTTCTGAGAGCTTTGGTTTGGGATGA 2799 0.4895 MEESSEGTETSKIRNICILAHVDHGKTTLADHLIAAAGGALLHPKLAGRVRFMDYLDEEQRRAITMKSSSICLRYGDHSINLIDSPGHMDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKIDRLITELKLTPSEAYVRLLRIVQEVNGIVSAFRSEKYLSDVDSLLATSGMNPNEIENEEADDEADEFQPQKGNVIFACALDGWGFGINKFAEIYASKLGASTKMIAKKKVGGGGDSGKGNAKPMFVQFVLEPLWQVYEGALKGGDEGKGVVEKVVRSFNLSVPARELQNKDPKAVLQAVISRWLPLADAVLSMVVRCMPDPAAAQTYRISRLMPKVEVXXEVGVDRSVLEETERVRKSVEVCDLREDAPCVAFVSKMFAVPVKMLPPLRGENGNSYGGEGESESDECFLAFARIFSGVLHAGQRVFXLSALYDPLKRESMQKHVQEAELQTLYLMMGQGLKVVTSAKAGNVVAIRGLGQHILKSATLSSSMNCWPFSSLAFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVTVSARGEHVLSAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGEASKMLESLKAFTKSTDYVEKTTPNGRCVVRVRVIKLLPSLTKVLDESPDLVGDVIGIKSAQTIKTLDCQRPNVTENDNLAEVLRKRIVDAVESDVLSWNEIDNDHAERCKLEWLKLLRRIWALGPRQIGPNILLTPNIKAEGTDNSVLVRGCSHVSDKLGFVPDSSDGNSVAETSSNASQALYKEAERLESSVVSGFELATAAGPLCDEPMWGLAFLVEAWISPLIEQKDESETHLQSEQYGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTECLGPMYAVLNRRRARVLKEEMQEGSPFFTVHAYVPVSESFGLG* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0597 932 Pfam Elongation Factor G, domain III 525 592 IPR041095 -
Amo11g0597 932 PANTHER - 8 928 - -
Amo11g0597 932 SUPERFAMILY EF-G C-terminal domain-like 877 931 IPR035647 -
Amo11g0597 932 Pfam Elongation factor Tu domain 2 429 507 IPR004161 GO:0005525
Amo11g0597 932 CDD eEF2_snRNP_like_C 877 931 - -
Amo11g0597 932 CDD aeEF2_snRNP_like_IV 596 881 - -
Amo11g0597 932 Gene3D - 620 871 IPR014721 -
Amo11g0597 932 PRINTS GTP-binding elongation factor signature 97 108 IPR000795 GO:0003924|GO:0005525
Amo11g0597 932 PRINTS GTP-binding elongation factor signature 81 91 IPR000795 GO:0003924|GO:0005525
Amo11g0597 932 PRINTS GTP-binding elongation factor signature 61 69 IPR000795 GO:0003924|GO:0005525
Amo11g0597 932 PRINTS GTP-binding elongation factor signature 15 28 IPR000795 GO:0003924|GO:0005525
Amo11g0597 932 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
Amo11g0597 932 Gene3D - 4 242 IPR027417 -
Amo11g0597 932 SUPERFAMILY EF-G C-terminal domain-like 523 597 IPR035647 -
Amo11g0597 932 SMART EFG_C_a 874 931 IPR000640 -
Amo11g0597 932 CDD EF2_II 389 510 - -
Amo11g0597 932 Pfam Elongation factor G C-terminus 875 931 IPR000640 -
Amo11g0597 932 Pfam Elongation factor Tu GTP binding domain 12 329 IPR000795 GO:0003924|GO:0005525
Amo11g0597 932 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 11 242 IPR000795 GO:0003924|GO:0005525
Amo11g0597 932 Gene3D Translation factors 341 522 - -
Amo11g0597 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 339 IPR027417 -
Amo11g0597 932 Gene3D Elongation Factor G (Translational Gtpase), domain 3 524 600 - -
Amo11g0597 932 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 8 928 - -
Amo11g0597 932 CDD EF2 14 235 - -
Amo11g0597 932 CDD EF2_snRNP_III 525 596 - -
Amo11g0597 932 Gene3D - 873 932 - -
Amo11g0597 932 SUPERFAMILY Translation proteins 380 518 IPR009000 -
Amo11g0597 932 SUPERFAMILY Ribosomal protein S5 domain 2-like 599 876 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0597 Amo-Chr11 10843607 10846456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0597 8 932 Eukaryotic Initiation Factors Gene Family AT3G22980 66.317 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0597 K14536 - pvu:PHAVU_003G003900g 1403.65