Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0537 ATGCCTGAAATACAGATGGATGAACCCATGGAAAGTGGTGAGAGGCCAGTCTTCAAAGATATTAGACGCTACTTCTGTGAATACTGTGGCATTTGCAGGTCTAAAAAGATCTTAATTACCTCCCACATCAATTCACAACACAAGGACGAGTTGGAAAAAGCTAGAGCTGAAGGAAATAATGAAGCACATTGCGAAAAGCCCAACAACACTTGCCAACAATGTGGTGCTAGCTTCAAAAAACCTGCCTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGGTATTTGATTTATTAACAAAACACCCTTTTGTAACTAATTAA 324 0.3981 MPEIQMDEPMESGERPVFKDIRRYFCEYCGICRSKKILITSHINSQHKDELEKARAEGNNEAHCEKPNNTCQQCGASFKKPAYLLQHMQSHSLEVFDLLTKHPFVTN* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0537 107 Pfam Zinc finger, C2H2 type 70 91 IPR013087 -
Amo11g0537 107 PANTHER ZINC FINGER PROTEIN 12 94 - -
Amo11g0537 107 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Amo11g0537 107 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Amo11g0537 107 SUPERFAMILY beta-beta-alpha zinc fingers 22 92 IPR036236 -
Amo11g0537 107 SMART c2h2final6 69 91 IPR013087 -
Amo11g0537 107 SMART c2h2final6 24 47 IPR013087 -
Amo11g0537 107 PANTHER - 12 94 - -
Amo11g0537 107 Gene3D Classic Zinc Finger 6 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0537 Amo-Chr11 9399908 9402842 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo11g0537 zf-C2H2 0.00018 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0537 K09191 - gmx:100801812 131.339