Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0532 ATGGAAAACATGAATAAGGATGCAGAGAATGATGCAAACAGTTTCACTGCAATGGGGAAATGTGTGGGAGATGGTGGCAATAATAGCGGTGGCGAAGATGGTGGTGGGGCGACAGCGACAGGTGAGGTGGCTTTGAAAAAGGGTCCTTGGACGACAATAGAAGATGCAATTTTAGTTGATTACGTGACGAAGCACGGTGAAGGGAATTGGAATGCAGTGCAAAGGAACACAGGGTTGGCTCGATGTGGAAAAAGTTGTAGGCTCAGATGGACAAACCATTTGAGACCAAATCTGAAGAAAGGTGCTTTCTCACCTGAAGAAGAAAAGCTCATCATTGAATTCCATTCTCAGTTTGGCAACAAATGGGCTCGAATGGCTGCTTTGTTGCCTGGAAGAACTGACAACGAAATAAAAAATTATTGGAACACAAGGGTGAAGCGAAGGCAAAGGCAAGGTCTTCCTCTATACTCAGATGACCCTAATCGTTCCATTACTACAAGTACACCCACCGCCACCACTGTAACCTATCTCGGTGAAAACTTCACCAACAACGCTCCCATAACCATGTTCGAGTTTATCAAACAGAGTTATCCTCATTCTCCATCTCCACGACATCATTCTCCTTTAACTTCTCCGCTACAACACAGGGCATCATCCTATTCTCATATGCTTTCCCCTCTATCCTCTCCAGCTCACTCCCCATTGTCCTCACCTGCAACTTCTTTACCTCTCTCCTTCACCTTCCAGAGACCTGCACCATTGTTGTACAACCCTCTTAGCTTCAAGCGTTACCGCTCAACCCCAAGTTGTAACCCTACTACGTCCCCTACCATGAATAATCCAACCCACTTATCTGACATTGATAATGGCTTCCAGTTCCCTATGCAGCTCAATTCGTCTTCTTTCTCCCACTTCTTTCAAAATCCGACGTTGTTGGATCTTGAAAGAAGTGGATCCTCGTTGACATCTTCTCCTTCTAATGCTCAAAGCAAGATGCAACTTCTTTCGAATCATATCCCATTGTCGTTGCAAACGCAACAAATGGAGCCATTGGAAGTTAATTACGATATTGAGTACAATGACCCTAATTCTTTGAGTGCAAGTAATAGGTTGTTTGGGGATTTTCTATCCGAAACTCAACCCTCGACTTCTGGCCATCAGATTTTAAAGAAACGAAATTATCTGGGCTTAGATGAACGAGACAATAATGTGTTTGATTGCTGCCAAAGCTTTGATGACTCTCCTCTTAGCTCCCTTTATGGCTCTTCTACTCCAGTTCTAAAACAGAAGGAAGAAGCAACTAACCTAAACCAATCCATGAATGAGGATTTATCAACATTTCTCACTGTAGTGCCTTCAATCATGCAAGACCAACAAAATTGGCAATATAATTATGCAACAGAAGTTTCTGATAACGTCCAATCTTCTCATGTCATCATAGATGACAATTTTGGATTTGATATCAAGCCCAAACCTTCATTGTTTCCTCTTAGTATTGCTACAAACCATAACGATAATAGAGGATGTTACACATGGGATAATTTATCTAGCCAATGTTAA 1560 0.4231 MENMNKDAENDANSFTAMGKCVGDGGNNSGGEDGGGATATGEVALKKGPWTTIEDAILVDYVTKHGEGNWNAVQRNTGLARCGKSCRLRWTNHLRPNLKKGAFSPEEEKLIIEFHSQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDDPNRSITTSTPTATTVTYLGENFTNNAPITMFEFIKQSYPHSPSPRHHSPLTSPLQHRASSYSHMLSPLSSPAHSPLSSPATSLPLSFTFQRPAPLLYNPLSFKRYRSTPSCNPTTSPTMNNPTHLSDIDNGFQFPMQLNSSSFSHFFQNPTLLDLERSGSSLTSSPSNAQSKMQLLSNHIPLSLQTQQMEPLEVNYDIEYNDPNSLSASNRLFGDFLSETQPSTSGHQILKKRNYLGLDERDNNVFDCCQSFDDSPLSSLYGSSTPVLKQKEEATNLNQSMNEDLSTFLTVVPSIMQDQQNWQYNYATEVSDNVQSSHVIIDDNFGFDIKPKPSLFPLSIATNHNDNRGCYTWDNLSSQC* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0532 519 SMART sant 99 147 IPR001005 -
Amo11g0532 519 SMART sant 46 96 IPR001005 -
Amo11g0532 519 Gene3D - 46 99 - -
Amo11g0532 519 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 514 - -
Amo11g0532 519 MobiDBLite consensus disorder prediction 198 236 - -
Amo11g0532 519 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 514 - -
Amo11g0532 519 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Amo11g0532 519 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Amo11g0532 519 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Amo11g0532 519 MobiDBLite consensus disorder prediction 200 236 - -
Amo11g0532 519 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Amo11g0532 519 CDD SANT 49 94 IPR001005 -
Amo11g0532 519 SUPERFAMILY Homeodomain-like 45 141 IPR009057 -
Amo11g0532 519 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Amo11g0532 519 Pfam Myb-like DNA-binding domain 100 143 IPR001005 -
Amo11g0532 519 Gene3D - 102 148 - -
Amo11g0532 519 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0532 Amo-Chr11 9298951 9301172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0532 34 502 MYB Transcription Factor Family AT4G26930 36.250 2.71e-65 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo11g0532 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0532 - K09422 ahf:112723793 959.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0532 11 9298951 9301172 Amo11g0532 11 9298951 9301172 ECH
Amo11g0532 11 9298951 9301172 Amo01g0188 01 3242947 3244995 hybridization