Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0496 ATGGGTAGCGAAGAAGAGAAGGTTCTAGAGAAACAACTTGAGCATCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGACGACGCTCTTCTCGCTGATCCATCCAACACCGAGCTTCTCGCGGTTCATGGGGAGCTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAACGGGCCAGATTATTACAGGAAGCAGATTTGGTGTTGCACAGCACTAATCTTTTTGCTGAAGAAGAGAAAGTAGAGGCTCTTGATCCCACAGATGTTGAACCAGAGCCACTGGAGGAAAGTTGTTATTCTGTTGGATCTAAATGCAGATTCCGTCACAAAGATGGGAGATGGTACAATGGTCAAGTGGTACAGTTGGATAAGTCAGCAGCGAAYCTTTCATTCCTTACTCCTACATCTGAGAACATGCTGATCTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTGTCACATGGAGTTGATGTTCAATTGTCCTCACTGAAGAAATATGTCCCAACAATATGGAAGCCATCCTTGGRGGGGTCGAGTATATGGGCAGTCTCAAATGCTCATGSGGGCATTTGGAAGCGAGCTGAGCTRGAGTCTTGGGACGAGGATGTCGGAGCTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCAGCAAAGCTTGGGGCTGAAGAAATGGTATTGTCTGAGTATGCGGAAGTGAGTGACACAGAGAGTGATTCCAGCTTAGAAKACTCCGACTCTAGTGACTATGAGGAAGAGGAATRYCAAGGTTTAGGATTTCTTGAGAGCACCAACCTACAAAGGGGTGTTCAGACRGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGCGTAGCATCGAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGCGTAACTGGTCAGGGAATGCTAGATCCCATAACAGTGAAAGTCCTACCGGCAAAGCAATCGTTAGATCATGCACTTGAGTCTCAAAAAGGAGAAGAGGATACAGAGAAACAAAGCAAGAAACGGAGCCGTGGTGGTAAAAGAAAGCGCGATAAGAAATTAATGGAAGCAATTCGAGCAGCAAAAGAAGACGACGAATCGAATGTAGACGTCTTTACACTAATAAATAATCAACTMGCAGTGCACGGCCAAGCTTTAAATGGTGGATCAGGGAAAAAGCAGAGCAAAGATTCCGCAGAAGGTAAAAAGGTGGATAGGCGAACYTTGATTGCGTATGAGGATGAGGTGAAGGATTTGAAGTTGAGGGTTGAGAAGCTGGAAGCAATAGTGAATATCAACAGAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAGCAGAGACACGRAAGGCATTAGCCGAAGCTGAAGCCACGCATGCCTCTGCATCGAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1482 0.4453 MGSEEEKVLEKQLEHQLQEQRDSLSAIDDALLADPSNTELLAVHGELVQAIKDAEEGLLHLKRARLLQEADLVLHSTNLFAEEEKVEALDPTDVEPEPLEESCYSVGSKCRFRHKDGRWYNGQVVQLDKSAANLSFLTPTSENMLICKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYVPTIWKPSLXGSSIWAVSNAHXGIWKRAELESWDEDVGAGQVVFRDDGSSAKLGAEEMVLSEYAEVSDTESDSSLEXSDSSDYEEEEXQGLGFLESTNLQRGVQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVTGQGMLDPITVKVLPAKQSLDHALESQKGEEDTEKQSKKRSRGGKRKRDKKLMEAIRAAKEDDESNVDVFTLINNQLAVHGQALNGGSGKKQSKDSAEGKKVDRRTLIAYEDEVKDLKLRVEKLEAIVNINRKEKAVYEAAMRKLAETRKALAEAEATHASASNAVVSKEKEKRWLKF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0496 493 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 493 - -
Amo11g0496 493 Coils Coil 422 449 - -
Amo11g0496 493 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Amo11g0496 493 Coils Coil 453 487 - -
Amo11g0496 493 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Amo11g0496 493 MobiDBLite consensus disorder prediction 338 354 - -
Amo11g0496 493 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Amo11g0496 493 MobiDBLite consensus disorder prediction 335 368 - -
Amo11g0496 493 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Amo11g0496 493 Gene3D - 119 178 - -
Amo11g0496 493 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Amo11g0496 493 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Amo11g0496 493 MobiDBLite consensus disorder prediction 246 266 - -
Amo11g0496 493 MobiDBLite consensus disorder prediction 252 266 - -
Amo11g0496 493 SMART G-patch_5 292 338 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0496 Amo-Chr11 8548021 8553465 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo11g0496 G-patch 2.2e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0496 - - gmx:100796284 722.62