LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo11g0468	ATGGATAAAGCGGTTGATTCCAGTGGTGAGAATAAGCAGGATCAAGGGTGTAAGAACAAGCGAAAATCGGTTGATCCTTCCGTAGCTGTTACCAGTGCCCCCACATCTTTGATTGAGTTCCCTCGGTATGAATTATCGTCGGAGCTTCCACAAAACTTAAATGGTACTAATCCATCTGAGGTAGTATCAGATTGGTATAGAGTAGAATCAGAAATGCGTATGAACGAGCTTGTGGATTGGAATGATCCTATTGCAAACCAGCTTGAGGAATTACTGTTGTCTAATTTGCAAGCTGTTTTTCATGCTGCAATCAAGCAGATTGTTGAATTAGGATATGGTGAAGAGGTGGCTCACATGTCCATTTCAAGGAGAGCCTTGTACATAGAGGAAGGAGACCCTGTCTCAAATATTGTACAAGATACAGTGAATATTCTTAAGGGAAAAGATATTGCTGGTTCGGATGTCGTGTTTGAAAATTTTCAGCATTTACTGTACTACACCATGTTGGAGATGATCAGTGTACTTCGCGAAGTTAGACCGTCCTTAACAGCTGGCGAAGCAATGTGGCTTTTGTTGATGTGCGACTTGAACATCTCACTAGCCTGTTCAGCAGAAGATCGCCCGAGTGGTGTTGTTCAGAATGGGGAAAGCTCTTCTGGTTCTTCTGTTCCCCAGTCAAAGCCAGAGGTTCAAATCTCTGAATCTGACATAATTATTGAGCCAACTGTCCCAAAGGAATTGCCCCATAGTCACCAGAACAAGTCTGAAGCACCTAAGTTCGGAAGTTTCCAGAATGCCCCGAACAGTCAAAGTCTTCTTGTTTCAGAAGGGGGAAAGCTTCATAAGGGGAATGCTTCTTTGCTGGTCACTACAGAGAAATCCACAGGAACTTCAGTGGGTCCTGCTAAGGAATCTAAATCCGGGTCTAGTTCCAAGCGCCATAACAGAAAAGAAATAGTAGCACTTAGGCAGAAGTTCCTTCATATGGAGAAAGCTTACAGGGCTTGTGGAAAAGGTGGTTTTAAATCAGGGAAACTTACAAGTGTAAGTAGTTTGGTTGTTGAAAAAAGAATCAAGCAACCATCTGAAATTCCTAATCAGCAAATGAAGTGTGGTTCCTCAAATTCAACAAGCACAAAAGGAGTTCACTCAGCTGATGCAGCATGCTGTGTTTCGACCAATAGTTCCTCTACTTCAAATGGAAGAGGTAACACCGGAACATTACCTACAAAAGATGCAACATCTGCTTCTACTGTAGTCAATTCTACTACAGTGTCGGACACTACATCCAAGCCTAAGTCTGAACCTAGTTCCACTGACAATCAAAAGATTCTTGATTTCTGTGCCGGCATTCCTTATGATGAGTCTTTGGGTAAGTATGTGCCAAGAGATGAGAAGGATGAACTAACTTTGATGTTAATAGCTCGCGTGCAAGAATTGCAGTTTGGGATGCAAAGCTGGAACAACTGGACAAAACAAAAAGTTATGCAAGTTACTGAGAGGCTCGGAAAAGTGCAGAGTGAGCTTAAAGCTCTTAGGAAGGAGAAGCAAGAAGCCGACCTATATAAAAAAGATCAGAAACTTTTGGAGGAGAATGCAGTGAAGAGAATCTCTGAGATGGAGAATGCTATGGAGAATACTAGAAAGCAAATTGAGAATGCTACTTCTGCTGCAGTTGAGCTAGAGGCAGAGAACGCTTCGCTGAAGAAGGAATTGGATGATGCTAAGTTGTGGGTTCTAAAGTCGATGACAAGCCATCGACAAGCACTTGAGAGAGAGCAGATTGTTCTTAAACAGCTTCAATCATGGGAGAGCCAAAATGGTTTGCTTCGAGATGAGCTTGAGGGAGAGAAGCACAGTTTATCTAACCTACTACAAGTGCTACACAAGGAGAAAAATCTTCTAGCCAACATTGAGGGTAGACTGGAACAAGAGAGAGCTGTGAAAGAAAAGCTCCTTGCACAGGCAGCATCCATTAGAAAGGAAAGACAACAACTCGAAGCGCACATCAAATCTGAAGAGGATACTATTAGAAAAAGGGCAGCTAATGATATGCAGAAATATGTGGATGATATTGCAAGGCTTGAGAAAGAGTTGATTGAGTTAAAAATAAAATCCGAGTCTGAACAAATAGCAGCTCTTCGCAGGGGTGTTGATGGTAAAAATGACAAGTTCTCCAGAACCAGCAAGAATACTCCTACGGTGAAGGAGAACAAGAAATCTAATGCGTCCCAAACGATGGTTAGCAATCGAGATAAAATGTCTACCGGAAGCTTGAGGCGAGAGCAGGAGTGTGTCATGTGCCTATCAGACGAGATGTCAGTGGTTTTTCTGCCTTGCGCGCACCAGGTTGTTTGTCAAGACTGCAACGAACTCCACGAGAAGCAAGGGATGAAGGATTGCCCTTCATGTAGGACCCCAATCCAACGGAGGATTCATGCAAGATTTGCCGGACATTCGAGGGTGTAG	2469	0.4305	MDKAVDSSGENKQDQGCKNKRKSVDPSVAVTSAPTSLIEFPRYELSSELPQNLNGTNPSEVVSDWYRVESEMRMNELVDWNDPIANQLEELLLSNLQAVFHAAIKQIVELGYGEEVAHMSISRRALYIEEGDPVSNIVQDTVNILKGKDIAGSDVVFENFQHLLYYTMLEMISVLREVRPSLTAGEAMWLLLMCDLNISLACSAEDRPSGVVQNGESSSGSSVPQSKPEVQISESDIIIEPTVPKELPHSHQNKSEAPKFGSFQNAPNSQSLLVSEGGKLHKGNASLLVTTEKSTGTSVGPAKESKSGSSSKRHNRKEIVALRQKFLHMEKAYRACGKGGFKSGKLTSVSSLVVEKRIKQPSEIPNQQMKCGSSNSTSTKGVHSADAACCVSTNSSSTSNGRGNTGTLPTKDATSASTVVNSTTVSDTTSKPKSEPSSTDNQKILDFCAGIPYDESLGKYVPRDEKDELTLMLIARVQELQFGMQSWNNWTKQKVMQVTERLGKVQSELKALRKEKQEADLYKKDQKLLEENAVKRISEMENAMENTRKQIENATSAAVELEAENASLKKELDDAKLWVLKSMTSHRQALEREQIVLKQLQSWESQNGLLRDELEGEKHSLSNLLQVLHKEKNLLANIEGRLEQERAVKEKLLAQAASIRKERQQLEAHIKSEEDTIRKRAANDMQKYVDDIARLEKELIELKIKSESEQIAALRRGVDGKNDKFSRTSKNTPTVKENKKSNASQTMVSNRDKMSTGSLRREQECVMCLSDEMSVVFLPCAHQVVCQDCNELHEKQGMKDCPSCRTPIQRRIHARFAGHSRV*	823

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo11g0468	822	ProSiteProfiles	Zinc finger RING-type profile.	765	805	IPR001841	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	289	317	-	-
	Amo11g0468	822	Coils	Coil	678	712	-	-
	Amo11g0468	822	Coils	Coil	495	578	-	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	393	441	-	-
	Amo11g0468	822	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED	4	817	-	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	721	755	-	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	289	306	-	-
	Amo11g0468	822	Coils	Coil	611	676	-	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	727	754	-	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	209	268	-	-
	Amo11g0468	822	PANTHER	OS05G0141500 PROTEIN	4	817	IPR046934	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	1	21	-	-
	Amo11g0468	822	SUPERFAMILY	RING/U-box	759	811	-	-
	Amo11g0468	822	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	737	815	IPR013083	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	210	232	-	-
	Amo11g0468	822	Pfam	Family of unknown function (DUF6592)	95	204	IPR046527	-
	Amo11g0468	822	Pfam	Zinc finger, C3HC4 type (RING finger)	762	810	-	-
	Amo11g0468	822	MobiDBLite	consensus disorder prediction	1	29	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo11g0468	Amo-Chr11	8037767	8042263	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo11g0468	765	812	C3H Transcription Factor Family	AT1G73950	41.667	8.78e-06	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo11g0468	-		-	gmx:100793172	1018.07