Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0434 ATGGGTATCTCTCGTGATTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAGGTTTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCAGCAAACACAAAGCTCTCCAGCAACAAAACTGTTAGGAGGATCAGGGTTCGAGGTGGGAATGTAAAATGGCGTGCTTTGAGGCTTGACACTGGGAACTACTCTTGGGGTAGTGAAGCTGTGACTCGCAAAACGAGGATTCTCGATGTGGTGTATAATGCATCCAACAATGAACTTGTTCGAACTCAGACTTTGGTCAAGAGTGCCATCGTCCAGGTTGATGCTGCACCTTTCAAACAATGGTATCTCCAGCATTATGGTGTCGACATTGGTCGCAAGAAGAAGAGTGCAACTTCTGGCAAGAAAGAAGGGGAGGATGCTGAAACTGCAACCGAAGAAGTGAAGAAGAGTAACCATGTCTTGAGAAAGTTGGAGAAGCGTAAACAAACCCGGGTGCTTGATYCYCACATTGAAGAACAATTTGGAAGTGGTCGCCTCTTGGCTAGTATCTCATCCCGCCCCGGTCAATGTGGTCGTGCTGATGGATATATATTGGAGGGCAAAGAGCTTGAGTTCTACATGAAGAAGCTTCAGAAAAAGAAGGGCAAGGGTGCTGCTTAA 657 0.4703 MGISRDSMHKRRATGGKKKVWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSATSGKKEGEDAETATEEVKKSNHVLRKLEKRKQTRVLDXHIEEQFGSGRLLASISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0434 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 IPR001047 GO:0003735|GO:0005840|GO:0006412
Amo11g0434 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Amo11g0434 218 Gene3D - 27 213 - -
Amo11g0434 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 - -
Amo11g0434 218 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Amo11g0434 218 CDD Ribosomal_S8e_like 5 197 - -
Amo11g0434 218 Coils Coil 139 159 - -
Amo11g0434 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Amo11g0434 218 Gene3D Ribosomal protein S8e, subdomain 108 176 IPR042563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0434 Amo-Chr11 6991225 6993503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0434 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 85.437 1.58e-126 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0434 K02995 - gmx:100527325 377.867