Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0401 ATGGACTCCGCCCAAGAAAACTCACTCACAGAGCTCCGGCAAAGCAGTTCCGGCAACGCCGCGGAATTGCAATCGGAGGATCCGAATCGATCTTTTCCACAGCCTGATGCCGGAGCCACATCTTCCGCCAACGCCGGGGGTGCAAGGTACAAGCTGATGTCTCCGGCAAAGCTCCCGATCTCGAGGTCCCCGTGCGTCACGATTCCTCCGGGACTCAGTCCGACGTCATTTCTCGAATCTCCGGTGCTGCTTTCCAACATGAAGGTTGAACCTTCACCAACTACAGGTTCCCTTTCTAAGCTTCATCAAACAGGGCATGGTTCTGTGACTTCTGCTGCTGTATCTACTACATTTCCTGTAACCACTGTATGCTTCAATACCAGTACTGTTGATGACAGAACATCGAGCTTCTTTGAGTTCAAAGCACACAATAGATCAAATATGGTTAATGCGGATTTCAACAACCATGTAAATGAAAAATCTACTCAAATAGATGTTCAAGGAAAAGCCCCATGTTTCCCCTCGTCACCATCAGTTAAAAGTGAGATAGCAGTAACTTCAAATGAATTAAGTCTATCATCACCTGTTCAAATGGTTAGTTCAGGAGCTAGTTCTCATGTTGAAGTCGATATGGATGAATTTAACCACGGGGGCAGCACAGCCGGTGGGCTTCAAGCATCACAAGTTGAGAGTAAGAGCAATGGACTTCCGGTTGCATCTGACAGAGTATCTGATGACGGATATAACTGGAGAAAATATGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCACGAAGTTATTACAAATGTACACATCCCAACTGTGAAGTGAAGAAACTATTTGAACGTTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAACCGCCGATACTCTGCTGGAAGTATTATGTCAATGCAAGATGAGAGATCTGATAAGGTTTCTTTTGCTGGTCGAGATGACAAGGTATCCAATATATATGGCCAGGTCTCTCATGTTGCCGAGCCCGGCAGTACTCCAGAGCTGTCACCTGGAGCAGCAAGTGTTGATAGTCCAGAGGGTGCAGGGCTTGCATCAAATAAGATTAATGATGAGCTCGATGATGATGATCCTTTCTCCAAACGAAGAAAAATGGATCTTGGATGTGCTGATATCACTCCTGTAGTTAAGCCTATCCGGGAGCCAAGGGTTGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGATACCGTTGGCGTAAGTATGGGCAGAAGGTTGTGAGAGGCAATCCAAATCCTAGGAGTTACTACAAATGCACGAATGCTGGTTGCCCTGTTAGAAAGCATGTGGAGCGAGCATCTCATGATCCAAAAGCAGTAATAACCACATATGAAGGTAAGCACAATCATGATGTACCAACTGCAAAGAATAGTAGCCATGACATGGCAGGACAAGCTGCATCCATTGGACAGGCAAGAATTAGGCCAGAAGAAAGCGATACGATTAGCCTTGATCTTGGGATGGGCCTTAACCAAGCTGCGGAAAATGGCTCAAATGGGCAAGGGAGAGTGCCACTTTCTGAATTTGGAGGCAGCCAAACTCACACAAGCAATTCCAGTTTCAAGTTTGTCCATGCTACCTCAGCTCCAGTATACTTCGGTGTTCTAAATAACGGTTCAATTCCATCATATGGTTCTAGAGAAAATCTGAGTGATAGTACATCTTTGAACCACTCTACTTATCCCTGCCCGCAGAACATGGGAAGAATACTAACGGGTCCGTAG 1803 0.4526 MDSAQENSLTELRQSSSGNAAELQSEDPNRSFPQPDAGATSSANAGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSKLHQTGHGSVTSAAVSTTFPVTTVCFNTSTVDDRTSSFFEFKAHNRSNMVNADFNNHVNEKSTQIDVQGKAPCFPSSPSVKSEIAVTSNELSLSSPVQMVSSGASSHVEVDMDEFNHGGSTAGGLQASQVESKSNGLPVASDRVSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSAGSIMSMQDERSDKVSFAGRDDKVSNIYGQVSHVAEPGSTPELSPGAASVDSPEGAGLASNKINDELDDDDPFSKRRKMDLGCADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKNSSHDMAGQAASIGQARIRPEESDTISLDLGMGLNQAAENGSNGQGRVPLSEFGGSQTHTSNSSFKFVHATSAPVYFGVLNNGSIPSYGSRENLSDSTSLNHSTYPCPQNMGRILTGP* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0401 600 MobiDBLite consensus disorder prediction 220 238 - -
Amo11g0401 600 SUPERFAMILY WRKY DNA-binding domain 411 479 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 MobiDBLite consensus disorder prediction 579 600 - -
Amo11g0401 600 ProSiteProfiles WRKY domain profile. 239 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 ProSiteProfiles WRKY domain profile. 414 479 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 37 566 - -
Amo11g0401 600 SMART WRKY_cls 244 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 SMART WRKY_cls 419 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 MobiDBLite consensus disorder prediction 344 386 - -
Amo11g0401 600 MobiDBLite consensus disorder prediction 1 46 - -
Amo11g0401 600 MobiDBLite consensus disorder prediction 216 240 - -
Amo11g0401 600 MobiDBLite consensus disorder prediction 1 41 - -
Amo11g0401 600 Pfam WRKY DNA -binding domain 245 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 Pfam WRKY DNA -binding domain 420 476 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 Gene3D WRKY domain 236 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 Gene3D WRKY domain 404 480 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo11g0401 600 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 37 566 IPR044810 GO:0003700
Amo11g0401 600 SUPERFAMILY WRKY DNA-binding domain 242 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0401 Amo-Chr11 6393986 6400336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0401 53 600 WRKY Transcription Factor Family AT4G26640 55.576 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo11g0401 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0401 - - adu:107464084 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0401 11 6393986 6400336 Amo11g0401 11 6393986 6400336 ECH
Amo11g0401 11 6393986 6400336 Amo01g0269 01 4561789 4568062 hybridization