Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0400 ATGCAAACATCTCAAGAACATGAACTTCCCTATGGCTCTGGCAGGTTCTACATCGAGCCTGCCCAAAACCCGGAGTCATATTGCTTTCCATCAAGTGAGAACCTAGAAAACTACTCTTCCTCTGATAACAGCAACCATGCAACCTACCCATTGGTCAAGATTTCGGATCCATATTGCACCCTTGAATCTGCTTCAACAAGTAATATCCCATGCCAAAATTCTGCATCTACAGCCAATTTTTCGCCTAATGGTAGCCCGGTGTCAAAGCTAGAACCGAAATCACATGTCTTGAGGCCACAACATTCTCTCGAAACTACTAATGGCTCACCGGAGATAAATTCTTGCTTGACACATGACCTTGATGATCTGAGGGATAAGATAAGAGAGCTCGAAACTGCTATGCTGGGGCCTGATACAAATACACTAAATATGTATGATATTGTGGTTCCGGAACCAGAAGAACCTGATTCCTTTTTGGTGGCTGCAGAGAAGTGGAAGAAAACAATGGAGATCATATCCAGAGGTGATTTAAAGGAGATGCTTTATACTTGTGCAAAATCAATGGCGGAGAACGATATGGAGACTACTGATTGGCTGATATCAGAGTTGCGTAAAATGGTTTCGATTTCAGGTGATCCTCTGCAACGATTGGGAGCATACATGTTGGAGTCTCTTGTTGCAAGGATGGCTTGCACAGGAAGCAAAATCTACAAGGCCTTAAAATGCAGTGAGCCCACCGGCAACGAACTCCTCTCATACATGCATGTACTTTATGAAATATGTCCATACTTCAAGTTTGGGTATATGTCGGCGAATGGAGCAATTGCCGAAGCTATGAAGGAGGAAAGTCATGTTCACATAATTGATTTTCAGATTAGCCAGGGAACTCAGTGGGTAAGCCTAATTCAGGCTCTTGCTCGCCGACCGGGAGGGCCTCCTAGTATCAGAATAACAGCTGTTGATGACTCCTTTTCGGCTTATGCCCGGGGAGGGGGACTTGACATTGTAGGGAAAAGGCTATCAGCACTTGCACAGTCATGTAATGTACCTTTTGAGTTCCATGCTGTCAGAGTTCCTGCTTCTGAGGTGCAACTAGAAGATCTTGAACTTCGAACTAATGAAGCTGTGGCAGTGAATTTTGCCATTATGCTGCACCATGTTCCGGATGAAAGTGTTACCAGTCTAAATCCTCGCGACCGGTTGTTGAGATTGGCAAAGAACTTGTCTCCCAAGGTAGTGACTCTAGTTGAGCAAGAGTTTAGTACTAATAATGCTCAATTCTTGCCGCGTTTCATGGTGACATTAAACTACTACTTGGCTGTTTTCGAATCGATTGATGCCGTCCTGCCAAGGGAGCACAAGGAGAGGATCAATGTTGAGCAGCACTGCTTGGCTAGAGAAGTTGTCAACTTAGTAGCKTGRGAAGGGGAAGAAAGAGTSGAACGGCACGAGCTTCTGAATAAGTGGAGAAGGCGTTTCACCGCTGCTGGATTTGCGCCTTATCCGCTGAGCTCCTTTGTTAATGCTTCAATCAAGACCCTTTTAGAAAGCTACCCTGGACATTACACTCTAGAAGAGAGAGATGGCACACTTTATCTTGGTTGGATGAATCAGGTTCTTATTGTCTCTTGTGCTTGGAGATGA 1644 0.4465 MQTSQEHELPYGSGRFYIEPAQNPESYCFPSSENLENYSSSDNSNHATYPLVKISDPYCTLESASTSNIPCQNSASTANFSPNGSPVSKLEPKSHVLRPQHSLETTNGSPEINSCLTHDLDDLRDKIRELETAMLGPDTNTLNMYDIVVPEPEEPDSFLVAAEKWKKTMEIISRGDLKEMLYTCAKSMAENDMETTDWLISELRKMVSISGDPLQRLGAYMLESLVARMACTGSKIYKALKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEESHVHIIDFQISQGTQWVSLIQALARRPGGPPSIRITAVDDSFSAYARGGGLDIVGKRLSALAQSCNVPFEFHAVRVPASEVQLEDLELRTNEAVAVNFAIMLHHVPDESVTSLNPRDRLLRLAKNLSPKVVTLVEQEFSTNNAQFLPRFMVTLNYYLAVFESIDAVLPREHKERINVEQHCLAREVVNLVAXEGEERVERHELLNKWRRRFTAAGFAPYPLSSFVNASIKTLLESYPGHYTLEERDGTLYLGWMNQVLIVSCAWR* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0400 547 MobiDBLite consensus disorder prediction 72 88 - -
Amo11g0400 547 ProSiteProfiles GRAS family profile. 168 547 IPR005202 -
Amo11g0400 547 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 546 - -
Amo11g0400 547 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 546 IPR005202 -
Amo11g0400 547 MobiDBLite consensus disorder prediction 72 112 - -
Amo11g0400 547 Coils Coil 113 133 - -
Amo11g0400 547 Pfam GRAS domain family 177 547 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0400 Amo-Chr11 6387819 6391590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0400 1 547 GRAS Transcription Factor Family AT1G50600 57.505 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo11g0400 GRAS 8.1e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0400 - - aip:107620196 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0400 11 6387819 6391590 Amo11g0400 11 6387819 6391590 ECH
Amo11g0400 11 6387819 6391590 Amo01g0270 01 4570251 4574174 hybridization