Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0396 ATGTCTCCTTACAACAACACCAACACCCAAAACAAGAAGCACCCTCGTCTTCTTCCAAACCCCGCCCCACTGCACGCCCTCCCCGCTCCCGGCCGGCCATACCGATGCCACCAACCAGACCGGTCATCAAACCGTTCTAGTTACTGGTTTATTGGTTTATTGATCCAACCAGTTCAACCGGTAGTTCAATCGAAAAAATTAACCGGCGGGTTACCGATCCGGTCCAACCGACCGGTTTCCGATCGGTTCGGCGGTTTTACAGCGAAAGGCTCTGCATACAAGCGATTAGGGCTTGTAAGCATTACAAGTCAATTAACCAATAACCCCCCAAAACGCGCTGCAGGTGTTACGTCCCTTACACGCCCTCTCTCTGTTGTTGATGACCAGTTTGTTCCCAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGAAAAATTTTACAGGAACTATGCATGGTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACGAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGTTGGATCATTCACACCCTTGCTGTCCAAGTAAATCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCTGGTATTAGACCAAGCAAAACTTACCAATCATTTGTTGCGGCTACCGGGATCTGTGTTTGGGTGTATTCTGCAGATCTCTATGAAGACCGTCATATATGGGTTCCAATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTCAACAAGTTTATTACCCGGAACAGCTCGCTTATTCAATTTGTCAAACAATATGATAATTGCCTTGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGGAAGTCCAAGCACAATTCAGAGGAAAGGCGAATTGCATCACTAGATTAACGAATTCCGCTCTAGGCTATTCACTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTAGCAGCCGAGGTAAAATGTCAATGCTTATTATTCGAGTCAAGAGGGATATTGTACCGTCACGCCCTAAGCGTGTTAAGCTTTGA 1290 0.4519 MSPYNNTNTQNKKHPRLLPNPAPLHALPAPGRPYRCHQPDRSSNRSSYWFIGLLIQPVQPVVQSKKLTGGLPIRSNRPVSDRFGGFTAKGSAYKRLGLVSITSQLTNNPPKRAAGVTSLTRPLSVVDDQFVPKVGMTFTTLEDAEKFYRNYAWFSTRVRSTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKSEMLKQHRELSMSIRRTIENNEEAGIRPSKTYQSFVAATGICVWVYSADLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQEVQAQFRGKANCITRLTNSALGYSLNIQQVCGYLRLSSSRGKMSMLIIRVKRDIVPSRPKRVKL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0396 429 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 280 366 IPR031052 GO:0006355
Amo11g0396 429 PANTHER OS06G0517100 PROTEIN 280 366 - -
Amo11g0396 429 PANTHER OS06G0517100 PROTEIN 134 258 - -
Amo11g0396 429 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 134 258 IPR031052 GO:0006355
Amo11g0396 429 MobiDBLite consensus disorder prediction 1 15 - -
Amo11g0396 429 MobiDBLite consensus disorder prediction 1 31 - -
Amo11g0396 429 Pfam FAR1 DNA-binding domain 146 228 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0396 Amo-Chr11 6341239 6348498 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo11g0396 FAR1 1.1e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0396 - - adu:110280446 286.189