Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0384 ATGGATGAAAGTGAAAGTGGTGACATTGATTGGGAAAATGAACTGAGAAATTTTCAGAATGCAATAGCCACAGGGACCAAGTCCAAGAGAATCAAAGCCATGGCAATGCTTGCTCGTTACTCCAAACACGCCCCTGAACATGTATTGGCTCGCACCATACCCTTTCTTATGGWGATCCTTGGCCACAATAACCGTTCAAATGATTCTGCCAATTTCTCTCTTCAAATGGCTTCAGCTTATTGCTTGAAGTGCATAGCTTGCAGGAGTGACGAGTTGGTAACTCAAATGGGTGCAAACGGTGCTGCGCAATTGCTTATGAATTTGTTGCCTCATTCTGATGGGATGTTTCTGAAAGTTCTTGTGAAATGCTTGTTGGTTGTGGTTGGTTTTTGTAACACAAGTAGGGCTGTTGTTGCAACTGGTGGTGGGTTAGGTATCATTGTAAATAAGTTGAGTTCTTGCGAGGATCGGGAAATTCGAAGGTATTTGTTGGAGATTCTGAGTTTGTTGGCGCTACGGCGGAATGTTAGGAGGGAAATAGTTAGGCTTGATGCTCTTCACTATGTTGTGGAGGCTGTTGGTGTTGGTAGTATGGTCTCTAGAGAAAGGGCATGCCAAGCAATTGGGATGTTTGGAGTTACAAGAGAAGGTAGGCGGGCTGTTGTTGAATTGGGTGCAATACTCCCAGTTGTGGAGCTATTTTGCAGCAGAGATCACACCACGAAGCTTGTGGCTGGGAATACTCTTGGTGTGATCTCTGCCTATGTTGATTGCATTAGGTCAATTGCTCAAGCTGGGGCTATCCCCCTTTATTCCGAGCTTCTTGAAGGGGGCGATCCTTCTGGTAAGGACATCGCYGAGGARGCATTTTGCGTGTTGGCTMTTGATGAGGCTAACGCCATCGAAATTGTTGGGCACTTAGTAAGGATTATGAGAGATGGTGATAATGAGGCGAAGTCTGCAGCTGCTAATGTGGTGTGGGATCTATCAACTTACAACCACTCAATACCAGTGGTGCGCGATTCAGGCGTGATTCCGGTACTTGTTGAGCTTTTGGGGAGTGGAAGCAATGACGTAAAGGAGAATGTTTCTGGTGCATTTTCTCAGATGAGCTATGATAGGGTGAATAGAATTGCACTTTCCGATGCTGGGGTGGTTCCAATCTTCATTGACTTGTTGCATGACGATTTTGAGGAACTAAGGGATAATGCAGCTGAGGCTCTTGTCAATTTTTATGAAGATCCATTGTACCATGATAGTGTATCTCATATAATTGATGTTCCTTCATTCAGAAGCATGCAGAATCGGCTGGCTCAACTTCGTGAAACGAATGAGCGTGCTCCTGTAGAAAGAATGAATATTGATCTTCCCGCTTGGAATTCAGATCAAATAACCTAA 1398 0.4442 MDESESGDIDWENELRNFQNAIATGTKSKRIKAMAMLARYSKHAPEHVLARTIPFLMXILGHNNRSNDSANFSLQMASAYCLKCIACRSDELVTQMGANGAAQLLMNLLPHSDGMFLKVLVKCLLVVVGFCNTSRAVVATGGGLGIIVNKLSSCEDREIRRYLLEILSLLALRRNVRREIVRLDALHYVVEAVGVGSMVSRERACQAIGMFGVTREGRRAVVELGAILPVVELFCSRDHTTKLVAGNTLGVISAYVDCIRSIAQAGAIPLYSELLEGGDPSGKDIAEEAFCVLAXDEANAIEIVGHLVRIMRDGDNEAKSAAANVVWDLSTYNHSIPVVRDSGVIPVLVELLGSGSNDVKENVSGAFSQMSYDRVNRIALSDAGVVPIFIDLLHDDFEELRDNAAEALVNFYEDPLYHDSVSHIIDVPSFRSMQNRLAQLRETNERAPVERMNIDLPAWNSDQIT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0384 465 PANTHER U BOX DOMAIN-CONTAINING 5 446 - -
Amo11g0384 465 Gene3D - 335 429 IPR011989 -
Amo11g0384 465 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 5 446 - -
Amo11g0384 465 Pfam Armadillo/beta-catenin-like repeat 334 371 IPR000225 GO:0005515
Amo11g0384 465 Pfam Armadillo/beta-catenin-like repeat 375 410 IPR000225 GO:0005515
Amo11g0384 465 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
Amo11g0384 465 SUPERFAMILY ARM repeat 52 414 IPR016024 -
Amo11g0384 465 SMART arm_5 214 254 IPR000225 GO:0005515
Amo11g0384 465 SMART arm_5 332 372 IPR000225 GO:0005515
Amo11g0384 465 SMART arm_5 373 413 IPR000225 GO:0005515
Amo11g0384 465 SMART arm_5 296 331 IPR000225 GO:0005515
Amo11g0384 465 SMART arm_5 255 295 IPR000225 GO:0005515
Amo11g0384 465 Gene3D - 15 334 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0384 Amo-Chr11 6207361 6209594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0384 262 428 U-box Gene Family AT2G23140 27.326 4.05e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0384 - - gmx:100819735 567