Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0376 GAGGTGTTTGTATCTGAAGAGAAACACAGTTGCCACAAAAGGTGCTGGGCACATTTCTTGAAGGCGGACGGAGCAACGGAGAGGTTTCCATTTGAATACATTTCGGTCATCCACAATTACTCCATGGAAGAACTTGTTGATAAGGATCAGGCTAGGGGGATGGAAGGAAGCTACACAGTCTCTTCGAACATTCAACAACGACCCCAAGTACAGGTTATGACAGGTGAGACAATTGGTGTGGATGAAGAATATGCTGAATATGGGGAGGATTACGAGCAGCAACATGAGCCCGGGATGATTGTTGACGGAATTGGGTCATTTAATAGAATAGATTTTTCTTCTTTGACGTATGAGGAGATGCGGATGTTTGAGTTTTATGCGCAGATTCAAGGGTTTTCTATTCGGAGGTCAAAGGTTGGAAGAAGCACAAAGATTGGATCGGAGGGAGAAATTTTATGGCAGATTTTTATTTGCTCGAGACAAGGTGAGAGAGACGCCAAACATATTCATCGGGTAGAAAGGAAAATGGATCCTCGACCAATTACACGATGTGGGTGTGGTGCACAAATAAAGGTTCACGTTGATCAAAGCACTGGCCGTTGGTTCGTAGATAAGTTTTGTGGTGAACATAACCATGAGATGCTAGATGCAAGGTTTCGGGGGTTGTTGCGTTCTCATAGGGTAATCAAGGAAGGGGACATGCATCAAATTAACTCGATGAGAAAAGCTGAGATGCGTGTGCCAACCATATTTCGTGCATTTGTCACCCAATGCGGGGGATTTGAGACAGTTGGATTTGAAATTAAAGACATCTACAATGCAATAGAGAATGAAAGAAGAGTGGGGGCAAGTGATGCGGAGTGTGCCTTAAAGTATTTGTGTTGCCTAAAGAGGAATGACGCAAACATAAGAGAGCTAGTCGCCGATTATAGATCTGTGTATGGGCAACCCATTGTTAAGTCGAAGTTGGAGGCCTTGGAAAGCTACGCAGCAACAGTATACACCAAAGAGGTTTTTGAACTATTCCGGGAGGTCCTCCTTTTGTCCAGCAATGTAAGAGTTGTATCTTGCAAGAAAACTAGCACGTGTTCCCTGTTTGAGGTTACCATGTACTGCCGGGACCAGTCCTGGAGTGTGGCTTGGGACGAGGCGGATGACGAATTTACTTGCTCATGTTTGCGTATGGAATCATTTGGCATTCCTTGTGTGCACATGGTGGGGGTGTTTCTTTATCTGAACATCACTCAGCTTCCGGTGAAGACCATATGCGAACGATGA 1278 0.4476 EVFVSEEKHSCHKRCWAHFLKADGATERFPFEYISVIHNYSMEELVDKDQARGMEGSYTVSSNIQQRPQVQVMTGETIGVDEEYAEYGEDYEQQHEPGMIVDGIGSFNRIDFSSLTYEEMRMFEFYAQIQGFSIRRSKVGRSTKIGSEGEILWQIFICSRQGERDAKHIHRVERKMDPRPITRCGCGAQIKVHVDQSTGRWFVDKFCGEHNHEMLDARFRGLLRSHRVIKEGDMHQINSMRKAEMRVPTIFRAFVTQCGGFETVGFEIKDIYNAIENERRVGASDAECALKYLCCLKRNDANIRELVADYRSVYGQPIVKSKLEALESYAATVYTKEVFELFREVLLLSSNVRVVSCKKTSTCSLFEVTMYCRDQSWSVAWDEADDEFTCSCLRMESFGIPCVHMVGVFLYLNITQLPVKTICER* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0376 425 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 305 425 IPR031052 GO:0006355
Amo11g0376 425 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 122 296 IPR031052 GO:0006355
Amo11g0376 425 PANTHER OS03G0181600 PROTEIN 305 425 - -
Amo11g0376 425 ProSiteProfiles Zinc finger SWIM-type profile. 377 413 IPR007527 GO:0008270
Amo11g0376 425 PANTHER OS03G0181600 PROTEIN 122 296 - -
Amo11g0376 425 SMART 26again6 388 415 IPR006564 GO:0008270
Amo11g0376 425 Pfam FAR1 DNA-binding domain 123 215 IPR004330 -
Amo11g0376 425 Pfam SWIM zinc finger 389 413 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0376 Amo-Chr11 6081253 6083577 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo11g0376 FAR1 1.2e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0376 - - ahf:112772626 301.982