Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0358 ATGGCTGTAACCGACAGGTGTTTCGTGGAATGGAAAGAGCAGTTTGTTTCCCAGGAGCGTGGCAACCGTGTGGTCCACTATTACCTGAAGGATTCTGACGGGGAATCCATACTCGCTGTTGTGGGCACTGAGAGGAGTGTTAGGCACATGTTCTATGTTGTCGCCGATGAGTTTTTGGAAATTTGTGGGAAGGAAGGTTCTGTTCCTGCCGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTTGATTGGCTGACGTCAACGCTTTCGAAGCAGCATCTTCAGGGAGATAGAACTGGATCACCTAGTCATTCTTCAGGACAAGCTTATGATACCACAAATGGTAGTGTCAATGAAATTACTGGTCTTCCTGCACCGATAGCAAATAGCAAGGGATTTCTAACCCGAAACMCTAAAATATCCAAGTCTGACATTGTTTGGTCTGGAGTGGCYTGGACYTGTGGCAAGCAGCTTAAACATTATCATGCTTTTTGCAGGAATGGCATCAAAATAATTGTTCAATCATTTGTTTTTGTCATGGGCAAGGGAGAGAATCATTATGTTGCTTATTTAGAGGATATGTATGAAGATAGGAGGGGGCAGAAAAAGGTCAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTGATTCCTGTACGAAATCCACATCCCCGGGAAGTTTTCATCACACCTTATTCTCAAGTCATTAGTGCAGAGTGTGTTGATGGTCCCACCACGGTCTTAAGTCGTGAACATTATGAAAAATGCATGCCTTGCTTTTCCCCAACTTCATCAGATAGAATACATATGTGCTTTAGGCAATTTAGAAGCAACAAAGTCAAGCCCTTTGACTTGAGTAAACTGCGTGGGTACTATGATCAACCAATTCTTTCTTGCTTGCAATTTGATTCTATGCTGAATCCTAAGGGAAATGGCCTAGCAGGAGGAGATGAAGAGTTGAGTGCAGGTGAAACTGTAAAGCTCAGAGCCAAGAGAAGGGATAGGGGAACCCCTCAGTCTTTGATTGGTCGGCGGGGAGTTAGGAAGTTAGTTAGGAGTCAGCAAATGATGGTATACAAAAACTCACAGGGTGTAAATAATTCTAGGGCAGATAGGAGATTGTTTTCTCTGAAGGAAGTTGAGTCTCAACCTTGGTATAATGTCACATACAGGATTGATGACAAGATAGAGGTCCTCTGTCAGGATAGCGGTATCAGAGGCTGCTGGTTCAGGTGTACGGTTGTGCAGGTATCTCGGAAGCAGATGAAAGTCCAATATGATGATATTCAGGATGAAGATGGAAGTGGGAATCTTAAGGAATGGATCCCTGCTTTCAAGTTGGCCATGCCTGATAAACTTGGGATGAGACATCCTGGCCGATCGACAATCAGACCAGCTCCTCCAACTTCCAAAGATCAAGAATTGGTTATTGGAGTTGGAACTGCAATTGATGCATGGTGGAGTGACGGCTGGTGGGAGGGGGTTGTAACTGGAACTGATAACTATGTTGATGATAATGTGCAAGCATACTTTCCTGGTGAAGGCTTGCTAATGAAAGTACGTAAGAAAGATCTAAGAATATCTAGAGATTGGTCTGGGGACAGGTGGATTGGTATTAAGCCGAAGCTTGATATAACCTCAACTATATTCGCCATTAACGGCCTTAACACGAAGCATTCCACGTCCCCAGCTAAAGATGGGGACTCTATTGGTGTTGCAAATTCATGTGATGAAGTTCCAGCGAGTGACGAGCCTATTAATGAACCAGATTTTGCTGAAAAGATGGTTGAGGGTGTTGCTGAAGATGGGGATAACAATGATGATGGTGATAATGATAATAATGATAGTAAAAATAGTAATCTTGTGTCAGAAAAAGATACTCGAGCTGATAACAATGAGATTGAGATGAATAACATTGGTAATGAAGATAATGGTGATGATTCTAATAAGGACAGTAATGACAATGTTGATAAAGACGGCGAAAACGATAACAAGGATAGGGAGGCGTTTGGGACTTCCATGGAGGACTGTAAAGTTGACAAACCCGCCGAAATGGCTGTATAA 2067 0.4301 MAVTDRCFVEWKEQFVSQERGNRVVHYYLKDSDGESILAVVGTERSVRHMFYVVADEFLEICGKEGSVPAGFKWRSRREVVDWLTSTLSKQHLQGDRTGSPSHSSGQAYDTTNGSVNEITGLPAPIANSKGFLTRNXKISKSDIVWSGVAWTCGKQLKHYHAFCRNGIKIIVQSFVFVMGKGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGVIPVRNPHPREVFITPYSQVISAECVDGPTTVLSREHYEKCMPCFSPTSSDRIHMCFRQFRSNKVKPFDLSKLRGYYDQPILSCLQFDSMLNPKGNGLAGGDEELSAGETVKLRAKRRDRGTPQSLIGRRGVRKLVRSQQMMVYKNSQGVNNSRADRRLFSLKEVESQPWYNVTYRIDDKIEVLCQDSGIRGCWFRCTVVQVSRKQMKVQYDDIQDEDGSGNLKEWIPAFKLAMPDKLGMRHPGRSTIRPAPPTSKDQELVIGVGTAIDAWWSDGWWEGVVTGTDNYVDDNVQAYFPGEGLLMKVRKKDLRISRDWSGDRWIGIKPKLDITSTIFAINGLNTKHSTSPAKDGDSIGVANSCDEVPASDEPINEPDFAEKMVEGVAEDGDNNDDGDNDNNDSKNSNLVSEKDTRADNNEIEMNNIGNEDNGDDSNKDSNDNVDKDGENDNKDREAFGTSMEDCKVDKPAEMAV* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0358 688 MobiDBLite consensus disorder prediction 588 602 - -
Amo11g0358 688 SMART BAH_4 168 287 IPR001025 GO:0003682
Amo11g0358 688 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Amo11g0358 688 Pfam BAH domain 172 272 IPR001025 GO:0003682
Amo11g0358 688 SMART agenet_At_2 389 454 IPR014002 -
Amo11g0358 688 SMART agenet_At_2 476 534 IPR014002 -
Amo11g0358 688 MobiDBLite consensus disorder prediction 92 116 - -
Amo11g0358 688 MobiDBLite consensus disorder prediction 645 688 - -
Amo11g0358 688 MobiDBLite consensus disorder prediction 558 688 - -
Amo11g0358 688 Gene3D - 135 292 IPR043151 -
Amo11g0358 688 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 656 - -
Amo11g0358 688 PANTHER OS07G0607300 PROTEIN 4 656 - -
Amo11g0358 688 MobiDBLite consensus disorder prediction 611 633 - -
Amo11g0358 688 CDD BAH_plant_1 163 292 - -
Amo11g0358 688 Pfam Agenet domain 394 469 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0358 Amo-Chr11 5686882 5692128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0358 403 533 PHD Transcription Factor Family AT5G58610 29.851 3.41e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0358 - - gmx:100306240 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0358 11 5686882 5692128 Amo11g0358 11 5686882 5692128 ECH
Amo11g0358 11 5686882 5692128 Amo01g0309 01 5004504 5010037 hybridization