Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0320 ATGGGTTCGCCGCTGAAGAAGATCATGCTATGCAGTTCGGAAAAGGAGATTTTCAGTGTGGAAGAACAAGTGATGGTGCAACATTCGGTGATCATAAACAACATGATCGAAGATGGGTCGTTTAACCATGAAGAGAGCAAGATTCCACTGGATTGCGTTGACTCCAAGACCCTCAAGAAGATCATCGATTATTGTACGCACCACACTCACCACCGCAACGACAACCAAAAAGATCTTGAGGCTTGGGATGCTCAATTTCTCAATGTTGATTCTAACAGCCTTTATGATTTGTTGATGGCAGCAAATTATCTTGAGATTAGAAATCTCTTGGATCTGATATACGGAACTATAAAAAATATGATAAAGGGAAAGAAAATAGATGAGATACGCAGAATCCTCAACATCAAAGACCATGGCTTCACTCCTGAAGAGGAAGAACAAAATCGCAAGGAGTACCCACATCTTTATTAG 471 0.4076 MGSPLKKIMLCSSEKEIFSVEEQVMVQHSVIINNMIEDGSFNHEESKIPLDCVDSKTLKKIIDYCTHHTHHRNDNQKDLEAWDAQFLNVDSNSLYDLLMAANYLEIRNLLDLIYGTIKNMIKGKKIDEIRRILNIKDHGFTPEEEEQNRKEYPHLY* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0320 156 SUPERFAMILY POZ domain 7 71 IPR011333 -
Amo11g0320 156 Pfam Skp1 family, dimerisation domain 108 153 IPR016072 GO:0006511
Amo11g0320 156 PANTHER SKP1 6 151 IPR016897 GO:0006511
Amo11g0320 156 SUPERFAMILY Skp1 dimerisation domain-like 79 154 IPR036296 GO:0006511
Amo11g0320 156 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Amo11g0320 156 Pfam Skp1 family, tetramerisation domain 6 69 IPR016073 GO:0006511
Amo11g0320 156 Gene3D Potassium Channel Kv1.1; Chain A 4 156 IPR011333 -
Amo11g0320 156 SMART skp1_3 5 106 IPR001232 GO:0006511
Amo11g0320 156 CDD BTB_POZ_SKP1 7 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0320 Amo-Chr11 4882763 4885179 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo11g0320 Skp1_POZ 2.2e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0320 K03094 - tcc:18607537 134.035