Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0305 ATGGATACTAAATCAGCTGTTGATTTGATGGAGTCTTCCTCCGAGGTTCACTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGTCAGGCATGGAACAACCGACAACATCAGCGACTGACATGTATAAACAACCATTTGTCATAGGTGTTGCTGGTGGTGCAGCATCAGGCAAGACTGCAGTTTGTGATATGATTATTCAGCAACTTCATGATCAACGAGTTGTATTAGTTAATCAGGATTCTTTTTACCATAACTTGACTGAAGAGGAACTTGCTCGTGTACAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCTATTGCTATGTGTTATGGACAAGTTGAAGCGTGGTGAGGCAGTAGATATTCCAAAGTACGACTTCAAGAGTTACAAGAGTGATGTGTATCCAAAAAGAAGGGTAAACCCCTCAGATGTTATAATTTTGGAAGGGATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTCTGGCGAGAAGGATTAGACGAGATACTGGCGAGAAGGGTCGGGATATTGCAGTAGTTCTTGATCAGTATTCAAAATTTGTGAAACCAGCATTTGATGATTTTATTCTCCCTACAAAGAAGTATGCTGATATCATTATACCGCGTGGGGGAGATAATCATGTAGCCATTGACCTGATTGTACAGCATATCCGCACGAAGCTTGGTCAACATGACCTGTGTAAAATATATTCCAATTTATATGTCATTCAGTCAACTTTTCAGATACGGGGCATGCATACCCTGATACGTGATGCTCAGATAACAAAGCACGATTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTTGAACATGGGCTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGCGTGGACTTTTGTAAGAGATTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGTATCAAGATCGGGAAAATTCTAATTCACAGAGAAGGTGACAACGGTCAGCAGCTAATATACGAAAAGCTTCCAAACGATATCTCGGATAGGCACGTGTTACTGTTGGATCCTATCCTTGGCACAGGTAATTCGGCTGTACAAGCGATCTCTTTACTTATAAGAAAGGGTGTACCGGAGTCCAACATTATATTTCTCAACCTGATATCTGCACCTCAAGGTGTTCATGTGGTCTGCAAAAAGTTTCCTAGAATAAAAATAGTGACATCTGAGATCGAGATTGGTTTGAATAAAGATTATCGCGTCATACCAGGCATGGGTGAGTTCGGCGACCGGTACTTCGGAACAGATGATGATGAGCAGTTGGTGGTTCCTTCACAGTAG 1434 0.4163 MDTKSAVDLMESSSEVHFSGFHMDGFEQRKSGMEQPTTSATDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELARVQDYNFDHPDAFDTELLLCVMDKLKRGEAVDIPKYDFKSYKSDVYPKRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTGEKGRDIAVVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYSNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIEIGLNKDYRVIPGMGEFGDRYFGTDDDEQLVVPSQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0305 477 Gene3D - 251 466 IPR029057 -
Amo11g0305 477 PANTHER URIDINE KINASE 15 468 - -
Amo11g0305 477 CDD UMPK 49 247 IPR000764 -
Amo11g0305 477 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Amo11g0305 477 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Amo11g0305 477 CDD PRTases_typeI 324 439 IPR000836 -
Amo11g0305 477 Gene3D - 43 250 IPR027417 -
Amo11g0305 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 240 IPR027417 -
Amo11g0305 477 PRINTS Uridine kinase signature 47 64 - -
Amo11g0305 477 PRINTS Uridine kinase signature 77 88 - -
Amo11g0305 477 PRINTS Uridine kinase signature 122 137 - -
Amo11g0305 477 PRINTS Uridine kinase signature 179 189 - -
Amo11g0305 477 PRINTS Uridine kinase signature 193 204 - -
Amo11g0305 477 PRINTS Uridine kinase signature 215 228 - -
Amo11g0305 477 PANTHER URIDINE KINASE 15 468 - -
Amo11g0305 477 Pfam Uracil phosphoribosyltransferase 265 466 - -
Amo11g0305 477 TIGRFAM udk: uridine kinase 46 247 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0305 Amo-Chr11 4621874 4627907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0305 1 469 PRT Gene Family AT4G26510 83.864 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0305 K00876 - gmx:100527893 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0305 11 4621874 4627907 Amo11g0305 11 4621874 4627907 ECH
Amo11g0305 11 4621874 4627907 Amo01g0354 01 5550726 5556892 hybridization
Amo11g0305 11 4621874 4627907 Amo07g0209 07 1943929 1946236 PCT
Amo07g0209 07 1943929 1946236 Amo11g0305 11 4621874 4627907 PCT