Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0304 ATGGGAAAAATACCACCTGCATTTCGATCCGCTGTCACAAACCCTCAATTCAGAAACCCATCTTCTCTACTTCCTCCGTCCTCTCCATCCTCCAAACCCCATCACTTTCCCAAGAAAACCCCTTCTCATTTTCCCGGAAAATCCCGAAAACCTAACAACCAGCAACAACCTCCGAAAACCCCCGTTCTCTTCAAATCCCCGAGCCTCCAAGAAGCCAAGACCGTCTTCAACTCCATAATCAAAACCTCCGATTCCGCAAATGCTTCCATTGACCCTCGATTCCACAATTCTCTTCTTCAATCCTACGCTTCAATCTCCACCTTTGATGATTCCGTCGCTTTTCTCCGCCACATGTCCGCTGCAAGCCCTTCCTTCTCCCCCGACCGATCCACCTACCACATCCTCCTCTCCCAAACCTGCAACAACGATTCGCCTCCTGATTCCCCCTCCTCCCTTTCCCCAATTCATAAAACCCTAAATCTGATGGTCAAAGACGGCGTCTCCCCCGACAAATCCACCGCTGATGTCGCCGTGAGGTCGCTCTGTTCCGCCGGAAGGGTAGACCACGCTGTTGAATTGTTCAAAGAGCTTTCTTTGAAGCATTGTGTTCCAGACACTTACACTTTCAATTGCATTGTTAAACATCTATGTAAGTGCCGTAGCTTGAGTACTGTTTATGGATTCATTGATGAGATGCGTGATAGTTTCGGCTTTAAGCCTGATCTTGTTACTTACACGATTTTGATTGATAATGTGTGTAATACTAAGAACTTGAGGGAGGCTTTGAGGTTGGTTAGTGTGCTCAACGAGGAAGGGTTTAAGCCCGATTGCTTTTTATACAATACGATTATGAAAGGGTATTGTATGCTGAGTAGGGGGAGCGAGGCGATTGAGGTTTATAACAAGATGAAGGATGATGGGGTAGAGCCTGATCTTGTCACTTATAACACTTTGATTTTTGGGTTGTCGAAATGTGGAAGGGTTGTGGAAGCTAAAAAGTTGTTGCGAGTTATGGCGGAAAAGGGCTTTTTCCCCGACGAGGTGACTTATACTTCGCTGATGAATGGTATGTGCAGGAAAGGGGATGCACTGGGTGCATTGGCGTTGTTGGGAGAAATGGAGGACAAGGGGTGCTGTCCGAATTCGTGCACGTATAACACCCTGTTACATGGGTTATGTAAGTCTAGGTTGTTGGAGAAGGCAATGGAATTGTATGGAGTGATGAAATCAGGTGGTTTGAAGCTTGAGACAGCTTCTTATGCCACGTTTGTTAGGGCACTGTGTAGGGATGATAGAATTGCTGAGGCCTATGAAGTGTTTGATTATGCAGTTGAAAGCAAGAGTTTGACAGATGTTGTTGCTTACTCGACATTGGAGAGCACGCTTAAGTGGCTCAAGAAGGCAAAAGAAAAAGAGAAGGAAAGAAGAGGAGAGAAAATCTCAGATTGGCACAGGCAGCAGTACGACACAGCCATTGCAAAGAAGAAGAATTGTCAAAGAGGTACGAAGAGTCAGTTTTCGATCTGTTCTTCCATCGCACTTTCTGCTTGGAGGCTGTGTTGTGGTGTGTTTGGTTTAGGGTTGAATTATATCTCATGGGTTGTTTATGAAAACCTTGTCTTGTTTTGTTTAACCAAAGTGATAGTAGGCGACAGGGGTGCATCTTTTACAGCTTCATGTGATTTTCATGGCCTTGGAGTGGGCAGACTTACTGCAGATGTGCTCAATAATTCTTGCATGTGCACAGTTAAAAAGGAGCAATTCAGTGCACAAACATCTCGCTCAACGCAGTGTTCAGGAAAAGGCCGGTCTCCAAAGGATATAATCCTTGTCCTTATCTTCTTTGGTATTGCAACATTGATAATCTTCCTTATCATAAAACCAAGAACCCCCATTTTTGATATTCCAAATGCAAACCTCAATTTGGTGTACTTTGACTCTCCAAATTACATCAATGGTGACTTCACCCTCCTTGCAAACTTCACCAACCCCAACAAAAAAATCAATGTCCTTTTCGAGTCTTTAGACATCGAGCTCTTCTTCTCTGAGAGGCTCATATCGGCACAGTCGATAGAGCCGTTCCCTCAGAGGAGAAGAGAAAGCAAGTTGCAATCAGTGAACTTCATATCTAGCTTGGTGTTTTTGCCTCAGGATATTGGTGTGAAGCTTCAAAAGCAAGTTCAGAACAATAGGGTAATCTACAATGTGAAGGGAACATTTAGAGTGAAAATCACCATTGGTCTAATTCATGTATCTTATTGGTTGCATAGTAGATGCCAGATTGAGATGACTGGTCCACCAACTGGAGTATTAGTAGCAAGAAACTGCATAACAAAGAGATGA 2343 0.4417 MGKIPPAFRSAVTNPQFRNPSSLLPPSSPSSKPHHFPKKTPSHFPGKSRKPNNQQQPPKTPVLFKSPSLQEAKTVFNSIIKTSDSANASIDPRFHNSLLQSYASISTFDDSVAFLRHMSAASPSFSPDRSTYHILLSQTCNNDSPPDSPSSLSPIHKTLNLMVKDGVSPDKSTADVAVRSLCSAGRVDHAVELFKELSLKHCVPDTYTFNCIVKHLCKCRSLSTVYGFIDEMRDSFGFKPDLVTYTILIDNVCNTKNLREALRLVSVLNEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNKMKDDGVEPDLVTYNTLIFGLSKCGRVVEAKKLLRVMAEKGFFPDEVTYTSLMNGMCRKGDALGALALLGEMEDKGCCPNSCTYNTLLHGLCKSRLLEKAMELYGVMKSGGLKLETASYATFVRALCRDDRIAEAYEVFDYAVESKSLTDVVAYSTLESTLKWLKKAKEKEKERRGEKISDWHRQQYDTAIAKKKNCQRGTKSQFSICSSIALSAWRLCCGVFGLGLNYISWVVYENLVLFCLTKVIVGDRGASFTASCDFHGLGVGRLTADVLNNSCMCTVKKEQFSAQTSRSTQCSGKGRSPKDIILVLIFFGIATLIIFLIIKPRTPIFDIPNANLNLVYFDSPNYINGDFTLLANFTNPNKKINVLFESLDIELFFSERLISAQSIEPFPQRRRESKLQSVNFISSLVFLPQDIGVKLQKQVQNNRVIYNVKGTFRVKITIGLIHVSYWLHSRCQIEMTGPPTGVLVARNCITKR* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0304 780 MobiDBLite consensus disorder prediction 1 67 - -
Amo11g0304 780 Pfam PPR repeat family 275 324 IPR002885 -
Amo11g0304 780 Pfam PPR repeat family 345 394 IPR002885 -
Amo11g0304 780 Pfam PPR repeat family 204 254 IPR002885 -
Amo11g0304 780 MobiDBLite consensus disorder prediction 46 63 - -
Amo11g0304 780 Gene3D Tetratricopeptide repeat domain 259 360 IPR011990 GO:0005515
Amo11g0304 780 Pfam PPR repeat 419 441 IPR002885 -
Amo11g0304 780 Pfam PPR repeat 178 198 IPR002885 -
Amo11g0304 780 TIGRFAM PPR: pentatricopeptide repeat domain 383 414 IPR002885 -
Amo11g0304 780 TIGRFAM PPR: pentatricopeptide repeat domain 348 382 IPR002885 -
Amo11g0304 780 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Amo11g0304 780 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Amo11g0304 780 TIGRFAM PPR: pentatricopeptide repeat domain 313 347 IPR002885 -
Amo11g0304 780 TIGRFAM PPR: pentatricopeptide repeat domain 178 206 IPR002885 -
Amo11g0304 780 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Amo11g0304 780 Gene3D Tetratricopeptide repeat domain 361 486 IPR011990 GO:0005515
Amo11g0304 780 Gene3D Tetratricopeptide repeat domain 150 258 IPR011990 GO:0005515
Amo11g0304 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Amo11g0304 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Amo11g0304 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Amo11g0304 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Amo11g0304 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Amo11g0304 780 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 472 - -
Amo11g0304 780 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 472 - -
Amo11g0304 780 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0304 Amo-Chr11 4615628 4620298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0304 166 481 Glycosyltransferase AT1G05670 31.348 9.89e-42 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0304 - - adu:107458955 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0304 11 4615628 4620298 Amo11g0304 11 4615628 4620298 ECH
Amo11g0304 11 4615628 4620298 Amo01g0355 01 5558564 5562532 hybridization
Amo11g0304 11 4615628 4620298 Amo07g0206 07 1937176 1938184 PCT
Amo07g0206 07 1937176 1938184 Amo11g0304 11 4615628 4620298 PCT