Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0297 ATGAAAGGGAAGAACAGGAAGAAAAGAAGAAAAGCTTTGAATTGGAGCATGGAGAAAGAAGAAGTAGGTGCAAAATGGGTAACACACTATTCAAGTGATCACCAAATACTGTTGGTTGGGGACGGTGATTTCTCCTTCTCTCTTTCACTCGCACGATCCTTCGGTTCTGCTTCCAACATTGTAGCTTCTTCTCTTGATTCCTATGATGATGTTACCAAGAACTACAAGCAAGCGAAATCGAATTTAGACGAACTAAAACAGCTAGGAGCGTGCTTGTATTACGGAGTGGATGCAACCAAGATGAAGTATCTTCTGGAATTGAAGATGCGCAGGTTTGATCGCATTATATTCAACTTTCCTCATGCAGGTTTCCATGGAAAGGAAGACAACTTGACAGTGATTAAGAAGCATAAAGATCTTGTGCTTGGTTTCTTCAAGAATGCAAGTTGCATGCTTAGTGCTAATGGTGAAATTCATGTGAATCATAAGACTAGTCCTCCTTTCAGCAACTGGGAGATTGAGAAGCTTGGTGAACAAAGCTTATTGACATTGATCGAGCTTGCCGACTTCAGGAAAGAAGATTACCCTGGTTATAACAACAAGCGAGGCGATAGTGGTAGATGCGATGAACCCTTTCCACTCGGAATGTGCAGCACTTACAAGTTTATTAGAGCTACAATGAGGAAGTGCGAGAGGAAAAGGAAAAGGGGTTCAGGAGAGCAAATATGTCGCCCATATCTAGAAATACAAGATGCTAGGCAGCAATTACCAACTACTTCAGTTGATCTCAATTGTTATTCTCAATCAAGTGAGGTTTCGAAATTCCCGCGAATTGTGTCATCAGACTCATCACTCTATGGTTTGTCAAATGAACATGCTTCAATCAGATGTGGCTACCTGAACAATGTCGATGCAACACACCATAGAGCTGCTCATTGTGCTGCCTACTATTATGGTCAGGGTATGAGACAGAGCTCTCAGAGATTGTTGCAGCCTTTGCAACCAATGAAGCCATTGAATCCTTTCCAACTTTGGCCAACATCAACTAATGTTAGATATTCTCAAACATATTATGTTAGAACAATGGATATCACTCGACTGCCACTTGTTGCTAGAAATGAAGGCTACCAGGTCTATAGTGGCAGTTCAAATTATATGGGAGAAGCAGTTGGTGGAACAGTTCAAAGGTATCACTATGAAAGAGTAGAGAGACCTCAATTCCAGAGTTATCTCTCTGAGTTGCATTGGGAAGTTGTCAATGGTGGCAACTATGTTCATAGTGACATTCCCAGGATGGGTGTGATAGAAGAGAGGAATATGATGTTTATTAGGTCCTGA 1338 0.4141 MKGKNRKKRRKALNWSMEKEEVGAKWVTHYSSDHQILLVGDGDFSFSLSLARSFGSASNIVASSLDSYDDVTKNYKQAKSNLDELKQLGACLYYGVDATKMKYLLELKMRRFDRIIFNFPHAGFHGKEDNLTVIKKHKDLVLGFFKNASCMLSANGEIHVNHKTSPPFSNWEIEKLGEQSLLTLIELADFRKEDYPGYNNKRGDSGRCDEPFPLGMCSTYKFIRATMRKCERKRKRGSGEQICRPYLEIQDARQQLPTTSVDLNCYSQSSEVSKFPRIVSSDSSLYGLSNEHASIRCGYLNNVDATHHRAAHCAAYYYGQGMRQSSQRLLQPLQPMKPLNPFQLWPTSTNVRYSQTYYVRTMDITRLPLVARNEGYQVYSGSSNYMGEAVGGTVQRYHYERVERPQFQSYLSELHWEVVNGGNYVHSDIPRMGVIEERNMMFIRS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0297 445 Coils Coil 68 88 - -
Amo11g0297 445 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 37 202 IPR019446 GO:0070042|GO:0070475
Amo11g0297 445 PANTHER PHENYLALANYL-TRNA SYNTHETASE 20 226 - -
Amo11g0297 445 PANTHER BNAC06G26310D PROTEIN 20 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0297 Amo-Chr11 4520545 4523866 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0297 - - gmx:100802899 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0297 11 4520545 4523866 Amo11g0297 11 4520545 4523866 ECH
Amo11g0297 11 4520545 4523866 Amo01g0358 01 5598118 5601435 hybridization