Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0295 ATGAGCGATTCTGCTTACAAGGTCGACACCACCTCCCGCCTTGCTCAATGGCGAATCGACAACTTGGCCTCTTGCACTTACCGCAAATCCGATCCTTTCAAGATCGGAAAATGGAACTGGCATTTGTCTGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTATCCAGAAATTTCGAATCTAACACGAGATAACCCCCCGATTGCGTCCTTCATCATTAGGGTGGTTAGTTCTGTTGGAGATCGCAAGTCCCTCACTCATCCAGAGATAAGAGATAAGCTGATAAAGAGCAACGAGGACTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATCGACGTTGAGTTCCTTGATTTGAAGACTGCATCCCCAAACGGTGAGGAACCTTGTTCTATTTGGGCTGCCGGTTTTACTCAGCAAAGATCAAATGCGACGGCGCTTGAGACTCTGGGTAAAATGCTAACAGAAGGGATTCACACAGACATAACCATCAATGCTTCGGACGGAAGCATAGGAGCTCACAGGGCAGTTCTGGCTGCCCGGTCGCCTGTGTTTCGCAGCATGTTTTCGCACGATCTCAAGGAGAAAGAGCTGTCAACTGTCAACATCCAAGACATGTCGATTGAAGCTTGCCAGGCACTTCTAAATTATCTCTATGGGATCATTAAGAACGACGAGTTTTTGATGCATAGATTAGCCCTTCTACATGCTGCTGATAAATATGACATATCTGACTTGAGAGAGGCATGTCATGAGAGTCTTCTAGAAGACATTGACACGAAAAATGTCCTCGAGAGGCTCCAGAATGCGTCGCTGTATCGGCTGATGAAACTGAAGATGAGCTGTATTAGATATCTTGTGAAATTTGGTAAGGTATTCGAAATTCGCGATGATTTCAATTGCTTTATGCAAAATGCAGATAGGGATTTGATTGCTGAAGTCTTCCATGAAGTTCTTGATGCATGGAAAGGATTCTGA 987 0.4438 MSDSAYKVDTTSRLAQWRIDNLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLYPEISNLTRDNPPIASFIIRVVSSVGDRKSLTHPEIRDKLIKSNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNGEEPCSIWAAGFTQQRSNATALETLGKMLTEGIHTDITINASDGSIGAHRAVLAARSPVFRSMFSHDLKEKELSTVNIQDMSIEACQALLNYLYGIIKNDEFLMHRLALLHAADKYDISDLREACHESLLEDIDTKNVLERLQNASLYRLMKLKMSCIRYLVKFGKVFEIRDDFNCFMQNADRDLIAEVFHEVLDAWKGF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0295 328 PANTHER OS08G0495500 PROTEIN-RELATED 1 328 IPR044714 -
Amo11g0295 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Amo11g0295 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Amo11g0295 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Amo11g0295 328 Pfam BTB/POZ domain 155 259 IPR000210 GO:0005515
Amo11g0295 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Amo11g0295 328 PANTHER OS08G0495500 PROTEIN 1 328 - -
Amo11g0295 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0295 Amo-Chr11 4361009 4363348 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo11g0295 BTB 1.2e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0295 K10523 - gmx:100790186 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0295 11 4361009 4363348 Amo11g0295 11 4361009 4363348 ECH
Amo11g0295 11 4361009 4363348 Amo01g0367 01 5766099 5768636 hybridization