Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0290 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCACTTTGGATGTCGATCCTCACGAATCTGTGGAAAACGTCAAGGCATTGCTGGAGGTTGAGACAAGTGTCCCTATTCAGCAACAGCAACTACTCTTCAATGGGAAGGAGATTAGGAATTCTGACAAGTTAAGTGCCATAGGCGTGAAGGATGACGATTTGCTTATGATGGTCTCCGGTGGTGGCAGTGGCGGCGGTGCTGCTAGTGGAACTGCCAATGAATTGAGTTTAAATGCCGATGGATCCGCTGTAAACCCCAGTGCTTTCCAGCAGCACATAAGACGTGATTCTAATTTGATAGGTCAGCTCTTTCAGAGTGATCCGGAGTTGGCGCAAGCTATTCTTGGGAATGATCTTAACAGATTGCAGGAAGTTTTGCGAATGCGTCATCGCCAAAGGGAAGAACTACAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTCTATGCGGATCCTTTTGATGTTGAAGCCCAAAGAAAGATTGAAGCTGCCATTCGCCAAAAAGGAATTGATGAAAACTGGGCAGCTGCACTGGAACATAATCCTGAAGCCTTTGCTAGAGTGGTTATGCTTTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTCGATAGTGGAGCCCAATCTACCATTATATCAAAAAGTTGTGCCGAGCGCTGTGGATTGTTGAGACTCTTAGATCAGCGATACAAAGGTATTGCTCATGGAGTTGGTCAATCAGAAATATTAGGTCGAATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTAGTTCTGGATTCTCCCAATATGGAGTTCCTTTTTGGGCTTGATATGCTCCGAAAGCACCAGTGTATAATCGATTTAAAAGATAATGTTTTACGAGTTGGTGGTGGAGAAGTTTCAGTGCCATTTTTGCATGAGAAAGACATACCGTCACGGTTTCTTGATGAGGAAAAGTTTAAGGAGGCTTCAAGCTCTGGCGCACAAGTTACATCAGGGGGCAATAATCCATCACCAAGGGGCCAGTCTTCTGGGGGAGCTTCTGGCGACAAGTCTAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTAGGATTTGGAAGAGCTGCAGTAATAGAAGCTCTTCAATTATTTAATGGCAATGAGGAACAAGCAGCAGGATTTCTTTTTGGGGGCTGA 1230 0.4398 MKITVMTADEQILTLDVDPHESVENVKALLEVETSVPIQQQQLLFNGKEIRNSDKLSAIGVKDDDLLMMVSGGGSGGGAASGTANELSLNADGSAVNPSAFQQHIRRDSNLIGQLFQSDPELAQAILGNDLNRLQEVLRMRHRQREELQRQKEEELALLYADPFDVEAQRKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLHEKDIPSRFLDEEKFKEASSSGAQVTSGGNNPSPRGQSSGGASGDKSKDSEFEAKVAKLVELGFGRAAVIEALQLFNGNEEQAAGFLFGG* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0290 409 SUPERFAMILY UBA-like 359 409 IPR009060 GO:0005515
Amo11g0290 409 PANTHER AT13091P 1 407 - -
Amo11g0290 409 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Amo11g0290 409 Coils Coil 131 154 - -
Amo11g0290 409 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Amo11g0290 409 SMART ubq_7 1 72 IPR000626 GO:0005515
Amo11g0290 409 MobiDBLite consensus disorder prediction 339 368 - -
Amo11g0290 409 Gene3D Acid Proteases 180 326 IPR021109 -
Amo11g0290 409 Gene3D - 339 409 - -
Amo11g0290 409 SMART uba_6 371 408 IPR015940 -
Amo11g0290 409 SUPERFAMILY Acid proteases 187 302 IPR021109 -
Amo11g0290 409 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Amo11g0290 409 Gene3D - 1 77 - -
Amo11g0290 409 PRINTS Ubiquitin signature 11 31 IPR019956 -
Amo11g0290 409 PRINTS Ubiquitin signature 32 52 IPR019956 -
Amo11g0290 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 366 409 IPR015940 -
Amo11g0290 409 MobiDBLite consensus disorder prediction 339 364 - -
Amo11g0290 409 Pfam UBA/TS-N domain 372 405 IPR015940 -
Amo11g0290 409 CDD UBA_scDdi1_like 372 407 - -
Amo11g0290 409 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Amo11g0290 409 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Amo11g0290 409 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Amo11g0290 409 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0290 Amo-Chr11 4303949 4310053 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0290 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 7.37e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0290 K11885 - gmx:100779464 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0290 11 4303949 4310053 Amo11g0290 11 4303949 4310053 ECH