Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0257 ATGATCATGGAACCCATATGTGAATTTTGTGGGGTTGTAAGAGCTGTGGTGTATTGCAAGTCGGATTCTGCGCGCCTATGCCTGAACTGTGATGCATCTGTGCACTCTTCCAATCCCCTGTCAAGCCGGCATGCGCGCTCTCTCCTCTGTGATCTCTGCTATTGCCAAGCAGCTGTTGTTTGTTGTGTAGATCATAACATGTGTGTGTGTGAAGCCTGTGAATGGAACCAGAATGAGTGCTTATTGAGGGGACACGGCCGCCTGCTGTTGAAGTTCTATACCGGTTGTCCCTCTTTCGAGGACTTGTCTAGGCTCTGGTCCTTTGTGTTTGATGCTAACTCCTCATGTGGTGGTGGTGGTGGTTTGGAACCAATTAGTACACTATGTGTGGAAAGACCTGATAATGATGATGGTTTATTTGATTTGGTGAGTGACAAGTTGACTGAGATACAACCTTGCTTCAAATTCGAGCCTTGGACGGATCTGTCTCCCATGATTCCATCAAATCAAGATACCATGCAATTCTGCAAAGATCAAGCACTTTTTTCCCCTCCAGAATCAAACCAGCCAAAGGGATGTTCTAATTTCAACTATCTTGGAATCGATGAAGGAAATGGTTTATGTCCTTCTGCGGATTCCATTGAGGCATCATCATCAGTCCAACAAGATTTTGTAACCTTTCAGTCTCCGAGCATGACGCCGACCTTCCACAGTAATGTGAATTGTGCTCTTGTGAGTCCTATTTACAACAGAGACATGAATCTTGGATTCCCTCAGGGCCAAGTTCATTCGAGCATATCGATGGAATTATCCAGCATTGCTGGAGACAGTAGTGTTACTGATCTAGATTGTGAGTTGTCCAATGAGATACAATGCCCACAGAGAAGGGCCAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACCCAAATGTTCGGCAAACAAATAAGATATGCATCTCGGAAAGCGAGGGCCGAGGCAAGAAAACAAGTGAAAGGTAGATTTGTTAAGACAGGAGAAGAATATGATTATGACTCTCTGCTGCAGAATAAGCTTGAATAA 1062 0.4397 MIMEPICEFCGVVRAVVYCKSDSARLCLNCDASVHSSNPLSSRHARSLLCDLCYCQAAVVCCVDHNMCVCEACEWNQNECLLRGHGRLLLKFYTGCPSFEDLSRLWSFVFDANSSCGGGGGLEPISTLCVERPDNDDGLFDLVSDKLTEIQPCFKFEPWTDLSPMIPSNQDTMQFCKDQALFSPPESNQPKGCSNFNYLGIDEGNGLCPSADSIEASSSVQQDFVTFQSPSMTPTFHSNVNCALVSPIYNRDMNLGFPQGQVHSSISMELSSIAGDSSVTDLDCELSNEIQCPQRRAKAKMRYNEKKKTQMFGKQIRYASRKARAEARKQVKGRFVKTGEEYDYDSLLQNKLE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0257 353 CDD Bbox1_BBX-like 6 49 - -
Amo11g0257 353 Pfam CCT motif 296 338 IPR010402 GO:0005515
Amo11g0257 353 ProSiteProfiles CCT domain profile. 296 338 IPR010402 GO:0005515
Amo11g0257 353 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 349 - -
Amo11g0257 353 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 4 349 - -
Amo11g0257 353 SMART bboxneu5 2 49 IPR000315 GO:0008270
Amo11g0257 353 ProSiteProfiles Zinc finger B-box type profile. 6 49 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0257 Amo-Chr11 3886211 3887624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0257 3 345 C2C2-CO-like Transcription Factor Family AT3G21880 34.417 5.75e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo11g0257 CCT 1.4e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0257 - - aip:107610341 735.332