Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0252 ATGAAAGGGTTTGGGTCTTCATGTGGAGCATGCAAGTACCTAAGGAGAAGATGCACAAGAGATTGTGTATTTTCTCCTTACTTCTCCTATGATGAGGCATCAACCCATTTTGCGGCAGTTCATAAGGTTGCAAGCTTGCAAAGGGAGATAGATGATATACTAGGGAATAATTTCATGATGAAGAATTCCTCGTGTCTTGGTGTTGAGAATTATTGTGGCAATGTTCATCAATCACCGATGATGAACATCAACAACGGGATAGAGTATACTGTGCAAGAAGGAACAAGGAGTCAATGTTATAAAAGTCAACTAGCTAATCAATTTTCTAGCGATGAAGAAATTGACAGAGAGTATGAAAGATTATTATTGATGGACACCGATAATTTATTATATGGTGAGACAGACCCCATCTCCCTGGAGAAGTTTCTGTCTGGAATTGACCAGGATGTGTTCCTTAATCATCCATGGTTCAAGCATAATAATAATAATGCTGACATTATTGGAAACTAG 510 0.3824 MKGFGSSCGACKYLRRRCTRDCVFSPYFSYDEASTHFAAVHKVASLQREIDDILGNNFMMKNSSCLGVENYCGNVHQSPMMNINNGIEYTVQEGTRSQCYKSQLANQFSSDEEIDREYERLLLMDTDNLLYGETDPISLEKFLSGIDQDVFLNHPWFKHNNNNADIIGN* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0252 169 Pfam Lateral organ boundaries (LOB) domain 7 45 IPR004883 -
Amo11g0252 169 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 43 - -
Amo11g0252 169 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Amo11g0252 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0252 Amo-Chr11 3852914 3854448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0252 1 43 AS2 family AT5G06080 79.070 8.03e-21 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo11g0252 LOB 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0252 K13945 - gmx:100787638 120.938