Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0245 ATGCCTGAAATGCAGATGGATGAACCCATGGAAAGTGGTGAGAGGCCAGTCTTCAAAGATATTAGACGCTACTTCTGTGAATACTGTGGCATTTGCAGGTCTAAAAAGATCTTAATTACCTCCCACATCAATTCACAACACAAGGACGAGTTGGAAAAAGCTAGAGCTGAAGGAAATAATGAAGCACATTGCGAAAAGCCCAACAACACTTGCCAACAATGTGGTGCTAGCTTCAAAAAACCTGCCTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCGTATGTGTGTATGGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGATCATTTGAATCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCCAATGGAGAATTGCAACCTAATCTTCTCAATAAAAGGTAATATGGCAAGACATGTTAAAGAGATTCATGATGAAGGATCTACATCCACAAATGTAGAAAGTAAGCAGTTTGTGTGCCCAGAAACTGGCTGTGGAAAGGTTTTCAAGTTTGCATCAAAGCTTCGTAAACATGCAGATTCTCATGTTAAGCTGCAGTCGGTAGATGTAGTGTGCTTGGAGCCTGGTTGCATGAAACATTTCACTAATAACCAGTGCCTTAAAGAACATATTGAATCCTGTCATCAATATGTAACCTGCGACACTTGTGGAAGTAGACAACTGAAAAAGAATATTAAAAGGCACCTTCGCACACATGAAGCTGACAAATCATTGGCAGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAAATTCTCAAGTAAATCTAATCTCGTTACACATAAGAAGGCCGTGCACTTTAAAGAAAAGCCCTTTGTGTGTGGTTTTCCTGATTGTGGCCTGAGATTTGCTTACAAACATGTCAGAGATAAACACGAAAAAACTGGGAAACATGTTTTTACCCATGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACTGTAGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTGTTATTTATGCAGGAGTGA 1092 0.4057 MPEMQMDEPMESGERPVFKDIRRYFCEYCGICRSKKILITSHINSQHKDELEKARAEGNNEAHCEKPNNTCQQCGASFKKPAYLLQHMQSHSLERPYVCMVDDCQASYRRKDHLNRHLLQHEGKTFKCPMENCNLIFSIKGNMARHVKEIHDEGSTSTNVESKQFVCPETGCGKVFKFASKLRKHADSHVKLQSVDVVCLEPGCMKHFTNNQCLKEHIESCHQYVTCDTCGSRQLKKNIKRHLRTHEADKSLAEFKCEFKGCSCKFSSKSNLVTHKKAVHFKEKPFVCGFPDCGLRFAYKHVRDKHEKTGKHVFTHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLLFMQE* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0245 363 SUPERFAMILY beta-beta-alpha zinc fingers 77 129 IPR036236 -
Amo11g0245 363 Pfam Zinc finger, C2H2 type 97 121 IPR013087 -
Amo11g0245 363 Pfam Zinc finger, C2H2 type 70 91 IPR013087 -
Amo11g0245 363 Pfam Zinc finger, C2H2 type 165 189 IPR013087 -
Amo11g0245 363 Gene3D Classic Zinc Finger 123 158 - -
Amo11g0245 363 ProSitePatterns Zinc finger C2H2 type domain signature. 288 312 IPR013087 -
Amo11g0245 363 ProSitePatterns Zinc finger C2H2 type domain signature. 167 189 IPR013087 -
Amo11g0245 363 PANTHER ZINC FINGER PROTEIN 12 354 - -
Amo11g0245 363 ProSitePatterns Zinc finger C2H2 type domain signature. 99 121 IPR013087 -
Amo11g0245 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Amo11g0245 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 156 IPR013087 -
Amo11g0245 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 126 IPR013087 -
Amo11g0245 363 ProSitePatterns Zinc finger C2H2 type domain signature. 128 151 IPR013087 -
Amo11g0245 363 PANTHER - 12 354 - -
Amo11g0245 363 SUPERFAMILY beta-beta-alpha zinc fingers 236 290 IPR036236 -
Amo11g0245 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 194 IPR013087 -
Amo11g0245 363 SUPERFAMILY beta-beta-alpha zinc fingers 124 152 IPR036236 -
Amo11g0245 363 ProSitePatterns Zinc finger C2H2 type domain signature. 199 222 IPR013087 -
Amo11g0245 363 Gene3D Classic Zinc Finger 283 309 - -
Amo11g0245 363 SUPERFAMILY beta-beta-alpha zinc fingers 159 190 IPR036236 -
Amo11g0245 363 Gene3D Classic Zinc Finger 10 97 - -
Amo11g0245 363 SMART c2h2final6 286 312 IPR013087 -
Amo11g0245 363 SMART c2h2final6 69 91 IPR013087 -
Amo11g0245 363 SMART c2h2final6 126 151 IPR013087 -
Amo11g0245 363 SMART c2h2final6 97 121 IPR013087 -
Amo11g0245 363 SMART c2h2final6 24 47 IPR013087 -
Amo11g0245 363 SMART c2h2final6 197 222 IPR013087 -
Amo11g0245 363 SMART c2h2final6 255 280 IPR013087 -
Amo11g0245 363 SMART c2h2final6 225 246 IPR013087 -
Amo11g0245 363 SMART c2h2final6 165 189 IPR013087 -
Amo11g0245 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 285 IPR013087 -
Amo11g0245 363 ProSitePatterns Zinc finger C2H2 type domain signature. 257 280 IPR013087 -
Amo11g0245 363 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Amo11g0245 363 Gene3D Classic Zinc Finger 159 190 - -
Amo11g0245 363 Gene3D Classic Zinc Finger 193 277 - -
Amo11g0245 363 Gene3D Classic Zinc Finger 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0245 Amo-Chr11 3664607 3668985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0245 93 315 C2H2 Transcription Factor Family AT1G72050 51.812 4.52e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo11g0245 zf-C2H2 0.0028 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0245 K09191 - gmx:100801812 555.829