Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0236 ATGATAAACCCATTTCATGAAAAATTAGGACAAGGTAGATATGGTATTGTATACAAAGCAAGTTTAAATGATGGTTGTCAAGTGATAGTAAAGATAGTTAAGGAGACAAAAAGAAGTGTGAAAGAATTTGCAAACAAGGGCACACTATATCAGGTCACAATTAGTATTACTCGAGAATTAGACTACTTACATCGAGTATGTAATATGAGAATTTTCATCTGGATATCAAAACCCAAAATATTCTTCTTGATGAGAACTTTTATCCAAAAATTGCAGATTTTGGATTATTTATATAATTAA 300 0.2933 MINPFHEKLGQGRYGIVYKASLNDGCQVIVKIVKETKRSVKEFANKGTLYQVTISITRELDYLHRVCNMRIFIWISKPKIFFLMRTFIQKLQILDYLYN* 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0236 99 PANTHER RUST RESISTANCE KINASE LR10-RELATED 46 91 IPR045874 GO:0004672
Amo11g0236 99 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 45 IPR045874 GO:0004672
Amo11g0236 99 Gene3D Phosphorylase Kinase; domain 1 3 71 - -
Amo11g0236 99 SUPERFAMILY Protein kinase-like (PK-like) 6 46 IPR011009 -
Amo11g0236 99 PANTHER TYROSINE KINASE FAMILY PROTEIN 46 91 - -
Amo11g0236 99 PANTHER TYROSINE KINASE FAMILY PROTEIN 2 45 - -
Amo11g0236 99 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Amo11g0236 99 ProSiteProfiles Protein kinase domain profile. 3 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0236 Amo-Chr11 3509888 3511338 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0236 1 83 Receptor kinase-like Gene Family AT1G66930 33.654 2.81e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo11g0236 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0236 - - aip:107636243 72.4034