Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0228 AGTTGTAGAAATGTTAAAAGGACCACTTCAATCACACAAGAAGAATATGGTATTATATACAAAGCAAGTTTAAATGATGATCGTCAAGTGGTAGTAAAAGTACTTAAGGAGTCAAAAGGAAGTGTGAAAAAAATTGTAAACAAGGTTGTTATTATTTGTAGAACATCTCATGTGAACATTATTAAACTTTCGGAATTTTGTTATGAAAAAATAACCAAGCACTTATTTATAAATTCATGTCTAATACATATAACTTTGTTTAGGTTAACAAATACCTACATTTCAATTTTGAGTATATATATATATATATATATATATATATTCCAGCAAAATGTAACAATGTAA 345 0.2522 SCRNVKRTTSITQEEYGIIYKASLNDDRQVVVKVLKESKGSVKKIVNKVVIICRTSHVNIIKLSEFCYEKITKHLFINSCLIHITLFRLTNTYISILSIYIYIYIYIFQQNVTM* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0228 114 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 74 IPR045874 GO:0004672
Amo11g0228 114 PANTHER TYROSINE KINASE FAMILY PROTEIN 10 74 - -
Amo11g0228 114 SUPERFAMILY Protein kinase-like (PK-like) 12 73 IPR011009 -
Amo11g0228 114 Gene3D Phosphorylase Kinase; domain 1 2 78 - -
Amo11g0228 114 Pfam Protein tyrosine and serine/threonine kinase 8 72 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0228 Amo-Chr11 3487419 3489837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0228 11 69 Receptor kinase-like Gene Family AT1G66980 45.763 8.81e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo11g0228 PK_Tyr_Ser-Thr 3.1e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0228 - - ahf:112743101 72.7886