Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0214 ATGAAGTGGGAAGTAGAAGTACTCTCTCCTTCTTCACCTTATGTTCATCATAACAACACAACTCATTGGTTTCTTGGAGATAACAACATCATCAACAACAACAATAATAGGAGCAGCACAAAATGGACCCATGAAGAGAACAAATTGTTTGAGAATGCTCTTGCTTTGCATGATAAGGATACACCAGATAGGTGGCACAGGGTAGCTGAGATGATTCCAGGGAAAACTGTTCTTGATGTGATGAAGCAGTACCATGAATTGTTAGCAGATGTTAGTGATATTGAAAATGGGTTGGTACCAATTCCAGGTTACAGTACCAGCACAACAACAACTACTTCACCTTTTACATTGGATTGGGTCAACAATAGTTGTTCTGGGTATGATGGGTTTAAAGGAATTGGTGCTGCTGCAAAGAGATCTTCAAAAACACCAGAACAAGAGAGGAAGAAAGGTGTGCCTTGGACTGAAGAAGAGCATAAATTGTTCCTACTTGGTCTAAAGAAGTATGGCAAAGGCGATTGGAGGAACATTTCGCGCAACTTCGTGATCACTCGGACGCCAACTCAGGTGGCGAGCCATGCTCAGAAGTACTTCATCCGACAACTCTCCGGCGGCAAAGACAAGAGGAGGGCAAGCATCCATGACATAACAACAGTTAATCTCACAGACAACAACAACAGAACACTTGCTAATCCTTCCTCAGAAGATAGCAGCAAGAGATCCACTTCACCACAACACCATCATTCCATGGTGTTCTCAAATTCAAATCCTATAGGGAAATTCCAATGGAACAATAATATTAATAATGATAATGATGATACTAAGTCAAATTCAGGAGGAGGAGTATCCACTATGAGATTCAACAATGATGATGAAGCTTTTATGTCTCATCATTATGGTGTTAATTCCTCCTATGGTTTTAAGATGCAGGGTCAGAATATGCATAAAAGTGCTCTTAATGAGTCTTCTTACTTAGCACTTCAGACACAAAACATTGCTTTCCAAATGTAG 1011 0.4036 MKWEVEVLSPSSPYVHHNNTTHWFLGDNNIINNNNNRSSTKWTHEENKLFENALALHDKDTPDRWHRVAEMIPGKTVLDVMKQYHELLADVSDIENGLVPIPGYSTSTTTTTSPFTLDWVNNSCSGYDGFKGIGAAAKRSSKTPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTDNNNRTLANPSSEDSSKRSTSPQHHHSMVFSNSNPIGKFQWNNNINNDNDDTKSNSGGGVSTMRFNNDDEAFMSHHYGVNSSYGFKMQGQNMHKSALNESSYLALQTQNIAFQM* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0214 336 ProSiteProfiles Myb-like domain profile. 34 88 IPR001005 -
Amo11g0214 336 MobiDBLite consensus disorder prediction 215 284 - -
Amo11g0214 336 MobiDBLite consensus disorder prediction 209 284 - -
Amo11g0214 336 CDD SANT 153 198 IPR001005 -
Amo11g0214 336 Gene3D - 33 101 - -
Amo11g0214 336 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 149 201 IPR006447 GO:0003677
Amo11g0214 336 SMART sant 150 200 IPR001005 -
Amo11g0214 336 SMART sant 38 90 IPR001005 -
Amo11g0214 336 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 316 - -
Amo11g0214 336 ProSiteProfiles SANT domain profile. 154 202 IPR017884 -
Amo11g0214 336 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 316 IPR043363 -
Amo11g0214 336 ProSiteProfiles Myb-like domain profile. 146 198 IPR001005 -
Amo11g0214 336 Gene3D - 152 202 - -
Amo11g0214 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 202 IPR017930 -
Amo11g0214 336 SUPERFAMILY Homeodomain-like 147 201 IPR009057 -
Amo11g0214 336 SUPERFAMILY Homeodomain-like 40 96 IPR009057 -
Amo11g0214 336 CDD SANT 41 88 IPR001005 -
Amo11g0214 336 Pfam Myb-like DNA-binding domain 153 198 IPR001005 -
Amo11g0214 336 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Amo11g0214 336 ProSiteProfiles SANT domain profile. 37 84 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0214 Amo-Chr11 3232991 3235377 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo11g0214 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0214 - - cam:101514273 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0214 11 3232991 3235377 Amo11g0214 11 3232991 3235377 ECH
Amo17g0977 17 25160470 25162476 Amo11g0214 11 3232991 3235377 ECH
Amo12g2224 12 101548679 101550525 Amo11g0214 11 3232991 3235377 ECH