Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo11g0205 ATGAATGGTAATAGTAGTAGTAATAGTGTTCATCATGAAAATGATGTTATTCCATTTCTTCATCATGAGTATGGTGGTAATAACAATAAGGTTACTACTACTAATAATAATTCTATGTGTCGGTTAGGGCTTCCTTTAACAGCCATAGATAGGTTCTTATGTAGCCAACAACAAAGTCAAGTCCTTCACAATGATGATAGTGTTTTTGATGAAGATTTTCSSMMSAWKSKKTYTSMTSRTTRTTATKRTGGTGGTGGTTCAAATAACYCTTATTATAAGCTTGTGTGGCCTAATTGCACTACTCASWAAGMARWMAKYRTTGTTWSTCATGATAATAATCAACAAGAGGGTTTCAATAATTGGCTACAACAAATTCCCACATTGTGTCACAATCAAGAAGATGTTCATCAAGCTTTAGGGAAAACTAATAATGTCAAAGTTGTGGGAAGAAACCCTAAAAAAGCTTCTTCTTCTTCTGTATCCTTCATCAAAGGACAATGGACTCCTGAAGAAGACAGGAAATTGGAGAAGCTGGTGAAACAACATGGAACAAGGAAGTGGTCACAAATAGCTGAAAAATTGGAGGGAAGGGCTGGGAAGCAATGTAGAGAGAGGTGGCATAATCATCTCCGACCAGATATTAAGAAAGACGGTTGGAGTGAAGAAGAAGAAAGGATATTGGTGGAAACTCATGCCAAGGTTGGAAATCGTTGGGCAGAAATCGCGAAGCATATACCAGGGCGAACTGAAAACTCGATCAAGAACCATTGGAACGCAACAAAGAGAAGGCAGAACTCAAGGAGAAAGAACAAGAAGCCATCATCATCATCAACCAACTCAAACAATAATGGCAAACCACAATCTTCAATTCTCCAAGACTACATTAGAAGCCAAACCCTAATTGGTACCAATAATATCAATGCTCCTATTACCACTACTAATTCAACCCCAACTATTACTAGTGAATCTGAATCTACCACTAATATTAGTGATAATAATAATCCATATTATTCATCACCAACAATCATAGCTGAATCATATGATGATGAGTTGCTCTTCATGCAACAACTTTTCAAAGAGAATAATCAAAATGTCAATGGAGATGGTATTGGTAAGAACCCTAGTGATGAATGTGGTGATGGGTTTGTTCATTATTCCAATAATTATTATTATCTTTCAAATCCATGGAACATGCACAACCCTATCACCAATAATAATAATAATAATGGTTACCTTGATTCTGATCTCTATATCTCTCAATTGATGAACAATGGAGGTGCAACAACAAGTTCATCATCATCACTTTTCAATGATCATGGGGCTTATGAGAAGAATCAAAACATGGATTTTCATTGTTCAGCAGCTGTGAAGAAAAGGGAGATTGATCTTTTAGAGTTTGTTTCCACTCATCATCAATTTTAA 1422 0.3502 MNGNSSSNSVHHENDVIPFLHHEYGGNNNKVTTTNNNSMCRLGLPLTAIDRFLCSQQQSQVLHNDDSVFDEDFXXXXXXXXYXGGGSNNXYYKLVWPNCTTXXXXXXVXHDNNQQEGFNNWLQQIPTLCHNQEDVHQALGKTNNVKVVGRNPKKASSSSVSFIKGQWTPEEDRKLEKLVKQHGTRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVETHAKVGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKKPSSSSTNSNNNGKPQSSILQDYIRSQTLIGTNNINAPITTTNSTPTITSESESTTNISDNNNPYYSSPTIIAESYDDELLFMQQLFKENNQNVNGDGIGKNPSDECGDGFVHYSNNYYYLSNPWNMHNPITNNNNNNGYLDSDLYISQLMNNGGATTSSSSSLFNDHGAYEKNQNMDFHCSAAVKKREIDLLEFVSTHHQF* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo11g0205 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 214 IPR017930 -
Amo11g0205 473 ProSiteProfiles Myb-like domain profile. 164 210 IPR001005 -
Amo11g0205 473 Gene3D - 163 215 - -
Amo11g0205 473 SMART sant 215 263 IPR001005 -
Amo11g0205 473 SMART sant 163 212 IPR001005 -
Amo11g0205 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 215 265 IPR017930 -
Amo11g0205 473 ProSiteProfiles Myb-like domain profile. 211 261 IPR001005 -
Amo11g0205 473 ProSiteProfiles SANT domain profile. 214 265 IPR017884 -
Amo11g0205 473 CDD SANT 167 210 IPR001005 -
Amo11g0205 473 PANTHER MYB PROTEIN-RELATED 148 409 - -
Amo11g0205 473 PANTHER TRANSCRIPTION FACTOR MYB119-RELATED 148 409 - -
Amo11g0205 473 MobiDBLite consensus disorder prediction 245 333 - -
Amo11g0205 473 Pfam Myb-like DNA-binding domain 167 224 - -
Amo11g0205 473 Gene3D - 217 289 - -
Amo11g0205 473 SUPERFAMILY Homeodomain-like 161 257 IPR009057 -
Amo11g0205 473 MobiDBLite consensus disorder prediction 271 333 - -
Amo11g0205 473 CDD SANT 219 261 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo11g0205 Amo-Chr11 3047070 3049688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo11g0205 158 468 MYB Transcription Factor Family AT5G58850 45.509 1.37e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo11g0205 Myb_DNA-bind_6 3.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo11g0205 K09422 - gmx:100786295 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0205 11 3047070 3049688 Amo11g0205 11 3047070 3049688 ECH